Os06g0667200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MADS30.
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Os06g0667200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MADS30.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.36 | 0.201 | 9.72 | 0.0649 | 0.118 | -0.298 | -0.164 | 5.97 | 0.105 | 21.1 | 30.2 | 4159 | -- | -- |
| 19.89 | 0.208 | 9.83 | -0.846 | 0.111 | 0.426 | -0.182 | -- | 0.082 | 21.1 | 28.36 | 4200 | -- | -- |
| 18.39 | 0.2 | 9.72 | 0.0905 | 0.12 | -0.308 | -- | 6.05 | 0.105 | 20.6 | 30.81 | 4458 | -- | -- |
| 19.98 | 0.208 | 9.83 | -0.848 | 0.109 | 0.428 | -- | -- | 0.0809 | 20.7 | 28.41 | 4158 | -- | -- |
| 19.15 | 0.204 | 9.7 | 0.162 | -- | -0.339 | -- | 6.24 | 0.106 | -- | 30.8 | 4649 | -- | -- |
| 26.14 | 0.24 | 9.84 | -0.741 | 0.127 | -- | -0.153 | -- | 0.0382 | 22 | -- | -- | -- | -- |
| 26.22 | 0.24 | 9.84 | -0.735 | 0.128 | -- | -- | -- | 0.0387 | 21.8 | -- | -- | -- | -- |
| 20.62 | 0.211 | 9.83 | -0.852 | -- | 0.442 | -- | -- | 0.0759 | -- | 28.2 | 4027 | -- | -- |
| 37.72 | 0.286 | 9.81 | -- | 0.122 | 0.263 | -- | -- | 0.177 | 20.7 | 30.3 | 4125 | -- | -- |
| 27.2 | 0.244 | 9.84 | -0.734 | -- | -- | -- | -- | 0.0386 | -- | -- | -- | -- | -- |
| 40.46 | 0.298 | 9.82 | -- | 0.127 | -- | -- | -- | 0.121 | 21.4 | -- | -- | -- | -- |
| 38.48 | 0.289 | 9.8 | -- | -- | 0.284 | -- | -- | 0.175 | -- | 30.61 | 4071 | -- | -- |
| 41.4 | 0.3 | 9.82 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.16 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 2 | 18.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 7 | 18.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 8 | 18.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 12 | 18.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 16 | 18.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 17 | 18.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 32 | 18.26 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 35 | 18.26 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 38 | 18.27 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 40 | 18.27 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 61 | 18.28 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 95 | 18.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 130 | 18.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 244 | 18.35 | temperature | 30 | 4320 | > th | dose dependent | sin | 23 | NA |
| 286 | 18.36 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 288 | 18.36 | temperature | 30 | 4320 | > th | dose dependent | sin | 20 | NA |
| 321 | 18.37 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 532 | 18.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 538 | 18.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 630 | 18.48 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 666 | 18.49 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 699 | 18.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 921 | 18.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 927 | 18.58 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 930 | 18.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 931 | 18.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 932 | 18.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 994 | 18.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 997 | 18.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 998 | 18.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |