Os06g0666400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os06g0666400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.36 | 0.526 | 10.6 | 1.15 | 1.53 | 0.97 | 0.368 | -1.41 | 0.951 | 14.8 | 28.7 | 1406 | -- | -- |
| 126.31 | 0.523 | 10.7 | 0.745 | 1.51 | 0.865 | 0.36 | -- | 0.866 | 14.7 | 28.04 | 1399 | -- | -- |
| 125.76 | 0.522 | 10.6 | 1.15 | 1.53 | 0.973 | -- | -1.32 | 0.968 | 14.8 | 28.6 | 1402 | -- | -- |
| 126.68 | 0.524 | 10.7 | 0.745 | 1.51 | 0.873 | -- | -- | 0.874 | 14.7 | 28 | 1393 | -- | -- |
| 244.88 | 0.729 | 10.6 | 1.13 | -- | 1.37 | -- | -1.35 | 0.988 | -- | 28.42 | 1216 | -- | -- |
| 161.19 | 0.595 | 10.7 | 0.415 | 1.6 | -- | 0.525 | -- | 0.69 | 14.7 | -- | -- | -- | -- |
| 162.14 | 0.596 | 10.7 | 0.427 | 1.6 | -- | -- | -- | 0.693 | 14.7 | -- | -- | -- | -- |
| 240.86 | 0.723 | 10.7 | 0.756 | -- | 1.4 | -- | -- | 0.945 | -- | 27.42 | 1219 | -- | -- |
| 141.09 | 0.553 | 10.7 | -- | 1.47 | 0.803 | -- | -- | 0.766 | 14.9 | 28 | 1308 | -- | -- |
| 311.32 | 0.824 | 10.7 | 0.359 | -- | -- | -- | -- | 0.652 | -- | -- | -- | -- | -- |
| 166.95 | 0.604 | 10.7 | -- | 1.59 | -- | -- | -- | 0.645 | 14.7 | -- | -- | -- | -- |
| 254.39 | 0.743 | 10.6 | -- | -- | 1.41 | -- | -- | 0.965 | -- | 26.2 | 1138 | -- | -- |
| 314.72 | 0.828 | 10.7 | -- | -- | -- | -- | -- | 0.612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 22 | 124.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 35 | 124.98 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 44 | 125.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 89 | 125.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 96 | 125.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 123 | 125.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 141 | 125.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 200 | 125.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 212 | 126.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 251 | 126.18 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 266 | 126.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 272 | 126.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 282 | 126.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 283 | 126.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 313 | 126.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 325 | 126.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 327 | 126.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 341 | 126.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 389 | 126.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 20 |
| 392 | 126.91 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 396 | 126.93 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 397 | 126.93 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 435 | 127.04 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 490 | 127.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 548 | 127.51 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 550 | 127.52 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 578 | 127.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 580 | 127.64 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 588 | 127.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 599 | 127.72 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 634 | 127.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 663 | 127.93 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 686 | 127.98 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 760 | 128.21 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 778 | 128.28 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 791 | 128.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 803 | 128.35 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 809 | 128.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 814 | 128.37 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 877 | 128.48 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 891 | 128.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 897 | 128.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 927 | 128.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 955 | 128.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 958 | 128.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 987 | 128.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |