Os06g0665900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os06g0665900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.35 | 0.227 | 10.7 | -0.69 | 0.318 | 0.367 | 0.103 | 1.14 | -0.517 | 19.8 | 21.1 | 10 | -- | -- |
| 24.48 | 0.23 | 10.8 | -0.882 | 0.32 | 0.432 | 0.0129 | -- | -0.567 | 19.8 | 22.01 | 12 | -- | -- |
| 23.38 | 0.225 | 10.7 | -0.697 | 0.318 | 0.369 | -- | 1.12 | -0.517 | 19.8 | 21.26 | 9 | -- | -- |
| 24.37 | 0.231 | 10.8 | -0.868 | 0.304 | 0.455 | -- | -- | -0.557 | 20.1 | 23.93 | 17 | -- | -- |
| 27.31 | 0.243 | 10.7 | -0.764 | -- | 0.445 | -- | 0.878 | -0.525 | -- | 24.15 | 265 | -- | -- |
| 27.39 | 0.245 | 10.8 | -0.789 | 0.381 | -- | 0.322 | -- | -0.501 | 18.1 | -- | -- | -- | -- |
| 27.63 | 0.246 | 10.8 | -0.793 | 0.383 | -- | -- | -- | -0.5 | 18.2 | -- | -- | -- | -- |
| 27.63 | 0.245 | 10.8 | -0.887 | -- | 0.516 | -- | -- | -0.559 | -- | 24.2 | 276 | -- | -- |
| 43.23 | 0.306 | 10.7 | -- | 0.348 | 0.256 | -- | -- | -0.413 | 18.7 | 26.7 | 2 | -- | -- |
| 35.22 | 0.277 | 10.7 | -0.803 | -- | -- | -- | -- | -0.508 | -- | -- | -- | -- | -- |
| 44.19 | 0.311 | 10.7 | -- | 0.394 | -- | -- | -- | -0.412 | 18.1 | -- | -- | -- | -- |
| 47.87 | 0.322 | 10.7 | -- | -- | 0.387 | -- | -- | -0.446 | -- | 24.5 | 282 | -- | -- |
| 52.23 | 0.337 | 10.7 | -- | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 2 | 21.92 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 6 | 22.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 18 | 22.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 20 | 22.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 23 | 22.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 109 | 22.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 124 | 23.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 158 | 23.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 200 | 23.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 211 | 23.38 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 216 | 23.40 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 218 | 23.41 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 232 | 23.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 249 | 23.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 250 | 23.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 271 | 23.53 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 287 | 23.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 308 | 23.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 394 | 23.77 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |
| 400 | 23.77 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 436 | 23.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 437 | 23.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 451 | 23.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 463 | 23.86 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 469 | 23.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 474 | 23.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 479 | 23.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 491 | 23.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 494 | 23.90 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 518 | 23.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 540 | 23.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 544 | 23.97 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 16 |
| 565 | 23.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 579 | 24.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 588 | 24.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 591 | 24.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 599 | 24.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 622 | 24.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 635 | 24.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 638 | 24.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 646 | 24.08 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 676 | 24.11 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 693 | 24.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 711 | 24.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 715 | 24.14 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 765 | 24.18 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 767 | 24.18 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 791 | 24.19 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 18 |
| 792 | 24.19 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 836 | 24.21 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 15 |
| 837 | 24.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 868 | 24.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 962 | 24.29 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 23 |
| 983 | 24.30 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 998 | 24.31 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 11 |