Os06g0665100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dreg-2 like protein.
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Os06g0665100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dreg-2 like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.25 | 0.143 | 12.4 | -0.603 | 0.119 | -0.793 | -0.367 | -2.32 | -0.158 | 3.76 | 11.8 | 238 | -- | -- |
| 12.24 | 0.163 | 12.3 | -0.25 | 0.131 | -0.82 | 0.17 | -- | -0.0622 | 3.53 | 10.51 | 242 | -- | -- |
| 9.53 | 0.144 | 12.4 | -0.571 | 0.138 | -0.766 | -- | -2.05 | -0.149 | 3.07 | 11.23 | 265 | -- | -- |
| 10.76 | 0.153 | 12.3 | -0.27 | 0.0746 | -0.725 | -- | -- | -0.053 | 3.12 | 21.37 | 238 | -- | -- |
| 10.14 | 0.148 | 12.4 | -0.516 | -- | -0.914 | -- | -1.98 | -0.123 | -- | 11.52 | 226 | -- | -- |
| 19.18 | 0.205 | 12.4 | -0.424 | 0.364 | -- | 0.325 | -- | -0.178 | 4.16 | -- | -- | -- | -- |
| 19.48 | 0.207 | 12.4 | -0.427 | 0.366 | -- | -- | -- | -0.179 | 4.15 | -- | -- | -- | -- |
| 10.97 | 0.154 | 12.3 | -0.245 | -- | -0.778 | -- | -- | -0.0488 | -- | 21.41 | 188 | -- | -- |
| 12.51 | 0.165 | 12.3 | -- | 0.0502 | -0.795 | -- | -- | -0.0177 | 2.4 | 21.1 | 224 | -- | -- |
| 26.75 | 0.242 | 12.4 | -0.413 | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
| 24.3 | 0.231 | 12.4 | -- | 0.358 | -- | -- | -- | -0.132 | 4.17 | -- | -- | -- | -- |
| 12.58 | 0.165 | 12.3 | -- | -- | -0.84 | -- | -- | -0.0122 | -- | 21.11 | 178 | -- | -- |
| 31.24 | 0.261 | 12.4 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 4 | 9.29 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 8 | 9.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 10 | 9.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 28 | 9.60 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 29 | 9.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 38 | 9.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 39 | 9.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 60 | 9.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 76 | 9.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 176 | 10.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 201 | 10.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 214 | 10.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 379 | 10.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 415 | 10.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 482 | 10.43 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 527 | 10.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 680 | 10.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 769 | 10.55 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 827 | 10.57 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |