Os06g0664100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xaa-Pro aminopeptidase 1.
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Os06g0664100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xaa-Pro aminopeptidase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.12 | 0.326 | 8.21 | 0.972 | 0.108 | -0.914 | -0.557 | 1.93 | 0.23 | 16.7 | 21.26 | 214 | -- | -- |
| 50.43 | 0.331 | 8.25 | 0.587 | 0.0146 | -0.704 | 0.0575 | -- | 0.108 | 1.08 | 21.08 | 212 | -- | -- |
| 48.44 | 0.324 | 8.22 | 0.901 | 0.167 | -0.909 | -- | 1.52 | 0.203 | 19.1 | 21.84 | 277 | -- | -- |
| 49.8 | 0.329 | 8.26 | 0.604 | 0.148 | -0.755 | -- | -- | 0.104 | 19.7 | 22.87 | 283 | -- | -- |
| 49.16 | 0.327 | 8.22 | 0.868 | -- | -0.814 | -- | 1.45 | 0.2 | -- | 21.56 | 186 | -- | -- |
| 60.11 | 0.363 | 8.28 | 0.445 | 0.236 | -- | 0.271 | -- | -0.00525 | 3.45 | -- | -- | -- | -- |
| 60.34 | 0.364 | 8.28 | 0.44 | 0.237 | -- | -- | -- | -0.00682 | 3.41 | -- | -- | -- | -- |
| 50.15 | 0.33 | 8.25 | 0.639 | -- | -0.939 | -- | -- | 0.126 | -- | 14.7 | 210 | -- | -- |
| 58.51 | 0.356 | 8.28 | -- | 0.139 | -0.649 | -- | -- | 0.000557 | 20.3 | 24.44 | 300 | -- | -- |
| 63.5 | 0.372 | 8.28 | 0.45 | -- | -- | -- | -- | -0.000543 | -- | -- | -- | -- | -- |
| 65.44 | 0.378 | 8.29 | -- | 0.246 | -- | -- | -- | -0.0558 | 3.41 | -- | -- | -- | -- |
| 59.06 | 0.358 | 8.28 | -- | -- | -0.588 | -- | -- | -0.00111 | -- | 24.16 | 219 | -- | -- |
| 68.83 | 0.387 | 8.29 | -- | -- | -- | -- | -- | -0.0504 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 5 | 47.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 10 | 48.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 15 | 48.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 24 | 48.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 28 | 48.53 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 30 | 48.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 35 | 48.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 41 | 48.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 53 | 48.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 57 | 48.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 60 | 48.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 61 | 48.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 63 | 48.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 64 | 48.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 65 | 48.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 73 | 48.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 80 | 48.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 90 | 48.89 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 93 | 48.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 95 | 48.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 119 | 48.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 123 | 48.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 126 | 49.01 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 158 | 49.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 164 | 49.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 165 | 49.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 173 | 49.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 178 | 49.18 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 182 | 49.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 193 | 49.21 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 196 | 49.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 197 | 49.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 213 | 49.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 13 |
| 214 | 49.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 220 | 49.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 252 | 49.31 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 274 | 49.35 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 7 |
| 293 | 49.36 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 303 | 49.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 305 | 49.37 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 315 | 49.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 316 | 49.38 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 319 | 49.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 361 | 49.43 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 370 | 49.44 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 374 | 49.44 | temperature | 30 | 720 | > th | dose dependent | sin | 4 | NA |
| 378 | 49.45 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 7 |
| 426 | 49.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 435 | 49.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 21 |
| 444 | 49.50 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 538 | 49.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 541 | 49.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 554 | 49.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 557 | 49.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 558 | 49.58 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 568 | 49.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 575 | 49.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 581 | 49.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 583 | 49.59 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 23 |
| 587 | 49.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 589 | 49.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 615 | 49.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 621 | 49.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 683 | 49.65 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 688 | 49.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 709 | 49.67 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 742 | 49.69 | temperature | 30 | 720 | > th | dose independent | sin | 3 | NA |
| 776 | 49.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 777 | 49.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 798 | 49.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 851 | 49.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 928 | 49.82 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 931 | 49.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 983 | 49.86 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 12 |
| 988 | 49.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 10 |