Os06g0664000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0664000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.06 | 0.486 | 6.33 | -2.53 | 0.849 | -0.705 | 0.971 | -1.26 | -0.619 | 4.91 | 1011 | 6184 | -- | -- |
| 110.78 | 0.49 | 6.36 | -2.78 | 0.85 | -0.606 | 1.13 | -- | -0.659 | 4.87 | 1012 | 5752 | -- | -- |
| 109.43 | 0.487 | 6.33 | -2.53 | 0.846 | -0.695 | -- | -1.28 | -0.62 | 5.02 | 1011 | 6223 | -- | -- |
| 113.28 | 0.496 | 6.37 | -2.79 | 0.871 | -0.45 | -- | -- | -0.683 | 5.03 | 1011 | 11134 | -- | -- |
| 147.51 | 0.566 | 6.34 | -2.46 | -- | -0.75 | -- | -1.38 | -0.578 | -- | 1009 | 5329 | -- | -- |
| 120.58 | 0.515 | 6.34 | -2.59 | 0.859 | -- | 0.967 | -- | -0.55 | 4.91 | -- | -- | -- | -- |
| 122.93 | 0.519 | 6.34 | -2.59 | 0.868 | -- | -- | -- | -0.555 | 5.05 | -- | -- | -- | -- |
| 151.35 | 0.573 | 6.37 | -2.72 | -- | -0.659 | -- | -- | -0.643 | -- | 1011 | 4527 | -- | -- |
| 234.41 | 0.713 | 6.21 | -- | 0.489 | 1.47 | -- | -- | 0.106 | 7.13 | 1015 | 47520 | -- | -- |
| 162.47 | 0.596 | 6.35 | -2.56 | -- | -- | -- | -- | -0.532 | -- | -- | -- | -- | -- |
| 299.54 | 0.81 | 6.28 | -- | 0.823 | -- | -- | -- | -0.266 | 5.16 | -- | -- | -- | -- |
| 257.3 | 0.747 | 6.22 | -- | -- | 1.54 | -- | -- | 0.0426 | -- | 1015 | 47520 | -- | -- |
| 334.99 | 0.854 | 6.29 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 3 | 102.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 4 | 102.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 6 | 103.03 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 10 | 103.39 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 19 | 103.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 21 | 103.69 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 59 | 104.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 61 | 104.52 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 62 | 104.53 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 72 | 104.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 73 | 104.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 74 | 104.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 79 | 104.67 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 81 | 104.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 98 | 104.98 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 99 | 104.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 105 | 105.04 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 107 | 105.05 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 117 | 105.05 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 136 | 105.07 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 140 | 105.09 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 141 | 105.09 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 142 | 105.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 144 | 105.10 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 152 | 105.11 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 155 | 105.11 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 190 | 105.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 191 | 105.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 192 | 105.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 203 | 105.22 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 207 | 105.23 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 232 | 105.30 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 238 | 105.32 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 276 | 105.51 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 278 | 105.51 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 279 | 105.51 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 18 |
| 286 | 105.52 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 16 |
| 295 | 105.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 13 |
| 300 | 105.54 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 16 | NA |
| 314 | 105.55 | radiation | 10.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 346 | 105.59 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 18 |
| 352 | 105.60 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 353 | 105.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 355 | 105.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 380 | 105.63 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 384 | 105.63 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 13 |
| 403 | 105.64 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 404 | 105.64 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 428 | 105.67 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 430 | 105.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 435 | 105.69 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 439 | 105.69 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 451 | 105.70 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 589 | 105.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 612 | 105.84 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 618 | 105.86 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 626 | 105.87 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 650 | 105.89 | wind | 5.0 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 660 | 105.91 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 663 | 105.91 | wind | 5.0 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 700 | 105.95 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 703 | 105.95 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 727 | 105.98 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 786 | 106.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 809 | 106.04 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 817 | 106.04 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 866 | 106.07 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 891 | 106.08 | temperature | 20.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 892 | 106.08 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 939 | 106.09 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 11 |
| 948 | 106.10 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 970 | 106.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 975 | 106.12 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 982 | 106.13 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 7 |