Os06g0663900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0663900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.82 | 0.39 | 9.88 | -1.48 | 1.19 | 0.469 | 0.42 | -6.66 | 0.584 | 10.7 | 25.59 | 4328 | -- | -- |
| 81.74 | 0.421 | 9.68 | 0.0293 | 1.12 | -0.188 | 0.277 | -- | 0.907 | 10.9 | 26.76 | 2164 | -- | -- |
| 69.52 | 0.388 | 9.88 | -1.47 | 1.19 | 0.477 | -- | -6.77 | 0.579 | 10.7 | 25.66 | 4294 | -- | -- |
| 73.66 | 0.4 | 9.63 | 0.332 | 1.18 | -0.645 | -- | -- | 1.16 | 10.5 | 32.39 | 19879 | -- | -- |
| 154.54 | 0.579 | 9.9 | -1.46 | -- | 0.462 | -- | -6.94 | 0.64 | -- | 26.8 | 4622 | -- | -- |
| 82.51 | 0.426 | 9.68 | 0.0208 | 1.19 | -- | 0.461 | -- | 0.9 | 10.7 | -- | -- | -- | -- |
| 83.39 | 0.428 | 9.68 | 0.0396 | 1.18 | -- | -- | -- | 0.901 | 10.7 | -- | -- | -- | -- |
| 155.77 | 0.581 | 9.65 | 0.39 | -- | -0.695 | -- | -- | 1.16 | -- | 32.89 | 20988 | -- | -- |
| 75.36 | 0.404 | 9.64 | -- | 1.19 | -0.524 | -- | -- | 1.08 | 10.7 | 32.7 | 19843 | -- | -- |
| 170.16 | 0.61 | 9.71 | 0.0159 | -- | -- | -- | -- | 0.894 | -- | -- | -- | -- | -- |
| 83.43 | 0.427 | 9.68 | -- | 1.18 | -- | -- | -- | 0.897 | 10.7 | -- | -- | -- | -- |
| 158.01 | 0.585 | 9.66 | -- | -- | -0.65 | -- | -- | 1.1 | -- | 33.13 | 19679 | -- | -- |
| 170.17 | 0.609 | 9.71 | -- | -- | -- | -- | -- | 0.892 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.20 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 16 | 67.33 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 17 | 67.41 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 18 | 67.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 19 | 67.68 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 20 | 67.70 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 37 | 67.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 38 | 67.94 | radiation | 20 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 39 | 68.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 55 | 68.08 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 56 | 68.08 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 61 | 68.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 65 | 68.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 67 | 68.40 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 77 | 68.41 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 80 | 68.44 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 81 | 68.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 83 | 68.62 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 9 | 23 |
| 84 | 68.64 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 90 | 68.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 21 |
| 91 | 68.81 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 92 | 68.81 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 107 | 68.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 18 |
| 138 | 68.89 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 188 | 68.96 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 196 | 68.97 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 226 | 69.01 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 230 | 69.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 290 | 69.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 291 | 69.07 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 369 | 69.18 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 375 | 69.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 14 |
| 410 | 69.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 427 | 69.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 432 | 69.25 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 465 | 69.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 493 | 69.30 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 518 | 69.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 539 | 69.38 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 541 | 69.39 | radiation | 10 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 545 | 69.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 564 | 69.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 572 | 69.45 | radiation | 10 | 43200 | > th | dose independent | sin | 12 | NA |
| 629 | 69.53 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 671 | 69.61 | radiation | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 677 | 69.63 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 685 | 69.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 688 | 69.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 9 |
| 693 | 69.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 695 | 69.74 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 699 | 69.75 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 714 | 69.79 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 745 | 69.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 748 | 69.86 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 762 | 69.86 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 768 | 69.88 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 780 | 69.90 | radiation | 10 | 43200 | > th | dose independent | sin | 4 | NA |
| 782 | 69.90 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 795 | 69.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 799 | 69.91 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 803 | 69.92 | radiation | 10 | 43200 | > th | dose independent | no | NA | NA |
| 901 | 69.94 | humidity | 80 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 926 | 69.98 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 950 | 70.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 959 | 70.02 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 979 | 70.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 999 | 70.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |