Os06g0663600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease V family protein.
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Os06g0663600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endonuclease V family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.78 | 0.588 | 6.02 | -1.58 | 0.148 | -1.54 | 0.0127 | 3.03 | -0.276 | 1.14 | 22.99 | 1022 | -- | -- |
| 165.18 | 0.599 | 6 | -1.22 | 0.196 | -2.29 | -0.578 | -- | -0.225 | 2.2 | 22.07 | 1207 | -- | -- |
| 156.02 | 0.582 | 6.03 | -1.61 | 0.184 | -1.58 | -- | 3.19 | -0.282 | 0.545 | 22.78 | 1159 | -- | -- |
| 161.97 | 0.593 | 5.96 | -1.22 | 0.417 | -2.77 | -- | -- | -0.125 | 2.23 | 21.4 | 317 | -- | -- |
| 157.86 | 0.585 | 6.02 | -1.6 | -- | -1.64 | -- | 3.04 | -0.285 | -- | 22.9 | 1088 | -- | -- |
| 216.56 | 0.69 | 5.9 | -0.654 | 0.302 | -- | -0.684 | -- | 0.112 | 1.49 | -- | -- | -- | -- |
| 218.23 | 0.692 | 5.9 | -0.63 | 0.305 | -- | -- | -- | 0.117 | 0.683 | -- | -- | -- | -- |
| 166.75 | 0.601 | 5.96 | -1.25 | -- | -2.34 | -- | -- | -0.2 | -- | 22.08 | 1077 | -- | -- |
| 193.59 | 0.648 | 5.91 | -- | 0.397 | -1.94 | -- | -- | 0.0449 | 1.49 | 21.5 | 267 | -- | -- |
| 224.04 | 0.699 | 5.89 | -0.619 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 228.68 | 0.707 | 5.88 | -- | 0.295 | -- | -- | -- | 0.188 | 0.583 | -- | -- | -- | -- |
| 200.22 | 0.659 | 5.92 | -- | -- | -1.56 | -- | -- | 0.00857 | -- | 22.53 | 864 | -- | -- |
| 234.14 | 0.714 | 5.87 | -- | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 2 | 153.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 6 | 153.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 14 | 153.29 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 23 | 153.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 42 | 153.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 65 | 153.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 93 | 154.12 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 115 | 154.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 179 | 155.63 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 198 | 156.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 214 | 156.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 254 | 157.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 270 | 158.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 278 | 158.70 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 22 |
| 280 | 158.77 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 283 | 158.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 297 | 159.20 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 299 | 159.27 | humidity | 90 | 14400 | > th | dose independent | sin | 6 | NA |
| 318 | 159.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 322 | 159.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 328 | 159.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 338 | 159.86 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 21 |
| 344 | 159.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 357 | 160.05 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 22 |
| 359 | 160.09 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 369 | 160.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 381 | 160.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 385 | 160.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 412 | 160.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 416 | 160.45 | temperature | 20 | 1440 | < th | dose dependent | sin | 7 | NA |
| 417 | 160.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 17 |
| 425 | 160.47 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 443 | 160.58 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 448 | 160.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 469 | 160.68 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 475 | 160.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 14 |
| 510 | 160.81 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 520 | 160.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 521 | 160.85 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 527 | 160.88 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 546 | 160.96 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 555 | 160.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 589 | 161.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 633 | 161.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 655 | 161.25 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 750 | 161.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 805 | 161.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 809 | 161.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 810 | 161.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 843 | 161.67 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 865 | 161.73 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 923 | 161.84 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 962 | 161.91 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 974 | 161.93 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |