Os06g0663400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Serine/thronine protein kinase-like protein.
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Os06g0663400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Serine/thronine protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.12 | 0.235 | 12.2 | 0.687 | 0.784 | 0.622 | -0.17 | -0.467 | -0.0735 | 17.3 | 29.3 | 6014 | -- | -- |
| 25.16 | 0.234 | 12.2 | 0.617 | 0.79 | 0.56 | -0.145 | -- | -0.0595 | 17.3 | 28.79 | 6009 | -- | -- |
| 25.06 | 0.233 | 12.2 | 0.658 | 0.787 | 0.604 | -- | -0.298 | -0.0244 | 17.4 | 28.76 | 6023 | -- | -- |
| 25.11 | 0.233 | 12.2 | 0.574 | 0.78 | 0.568 | -- | -- | -0.0554 | 17.3 | 28.72 | 5994 | -- | -- |
| 54.41 | 0.344 | 12.2 | 0.595 | -- | 0.599 | -- | -0.114 | 0.0301 | -- | 28.8 | 7109 | -- | -- |
| 40.45 | 0.298 | 12.2 | 0.366 | 0.772 | -- | -0.0979 | -- | -0.154 | 17.3 | -- | -- | -- | -- |
| 40.47 | 0.298 | 12.2 | 0.366 | 0.771 | -- | -- | -- | -0.155 | 17.3 | -- | -- | -- | -- |
| 54.37 | 0.343 | 12.2 | 0.554 | -- | 0.58 | -- | -- | 0.00573 | -- | 28.72 | 7106 | -- | -- |
| 33.03 | 0.268 | 12.2 | -- | 0.766 | 0.47 | -- | -- | -0.143 | 17.4 | 28.91 | 6004 | -- | -- |
| 71.5 | 0.395 | 12.2 | 0.339 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 43.99 | 0.31 | 12.2 | -- | 0.765 | -- | -- | -- | -0.196 | 17.3 | -- | -- | -- | -- |
| 61.9 | 0.366 | 12.2 | -- | -- | 0.487 | -- | -- | -0.0985 | -- | 28.9 | 7112 | -- | -- |
| 74.54 | 0.403 | 12.2 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 2 | 24.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 3 | 24.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 13 | 24.59 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 17 | 24.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 51 | 24.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 78 | 25.24 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 87 | 25.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 153 | 25.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 157 | 25.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 162 | 25.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 164 | 25.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 189 | 25.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 204 | 25.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 230 | 25.98 | temperature | 20 | 4320 | > th | dose dependent | sin | 8 | NA |
| 234 | 25.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 310 | 26.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 357 | 26.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 368 | 26.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 21 |
| 375 | 26.20 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 386 | 26.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 423 | 26.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 448 | 26.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 449 | 26.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 456 | 26.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 546 | 26.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 579 | 26.28 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 725 | 26.31 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 869 | 26.34 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 5 |