Os06g0663200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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Os06g0663200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.66 | 0.46 | 5.61 | 0.729 | 0.761 | -0.425 | 0.407 | 2.8 | -0.0966 | 9.73 | 25.5 | 785 | -- | -- |
| 106.33 | 0.484 | 5.71 | -0.0869 | 0.939 | -0.0466 | -0.317 | -- | -0.422 | 9.76 | 25.5 | 785 | -- | -- |
| 96.11 | 0.457 | 5.61 | 0.727 | 0.762 | -0.44 | -- | 2.73 | -0.0981 | 9.65 | 25.6 | 805 | -- | -- |
| 104.99 | 0.48 | 5.7 | -0.0524 | 0.961 | -0.165 | -- | -- | -0.353 | 9.99 | 24.28 | 1971 | -- | -- |
| 120.3 | 0.511 | 5.58 | 1.01 | -- | -0.916 | -- | 3.3 | 0.115 | -- | 25.7 | 744 | -- | -- |
| 106.48 | 0.484 | 5.72 | -0.0961 | 0.934 | -- | -0.349 | -- | -0.442 | 9.61 | -- | -- | -- | -- |
| 106.92 | 0.484 | 5.72 | -0.109 | 0.935 | -- | -- | -- | -0.442 | 9.67 | -- | -- | -- | -- |
| 133.47 | 0.538 | 5.68 | 0.0713 | -- | -0.714 | -- | -- | -0.19 | -- | 25.6 | 729 | -- | -- |
| 103.31 | 0.476 | 5.69 | -- | 0.977 | -0.225 | -- | -- | -0.342 | 9.92 | 23.73 | 1791 | -- | -- |
| 158.77 | 0.589 | 5.74 | -0.117 | -- | -- | -- | -- | -0.44 | -- | -- | -- | -- | -- |
| 107.23 | 0.484 | 5.71 | -- | 0.935 | -- | -- | -- | -0.43 | 9.68 | -- | -- | -- | -- |
| 133.66 | 0.538 | 5.69 | -- | -- | -0.73 | -- | -- | -0.19 | -- | 25.54 | 738 | -- | -- |
| 159.13 | 0.589 | 5.74 | -- | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 4 | 88.03 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 42 | 90.57 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 50 | 90.72 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 56 | 90.93 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 14 |
| 57 | 90.94 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 11 |
| 61 | 91.02 | temperature | 25.0 | 720 | < th | dose independent | sin | 17 | NA |
| 67 | 91.06 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 17 |
| 81 | 91.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 104 | 91.57 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 6 |
| 122 | 91.81 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 129 | 91.91 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 142 | 92.04 | temperature | 25.0 | 720 | > th | dose independent | rect. | 11 | 15 |
| 157 | 92.13 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 9 |
| 169 | 92.23 | temperature | 25.0 | 720 | > th | dose independent | sin | 17 | NA |
| 177 | 92.31 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 218 | 92.67 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 221 | 92.71 | temperature | 25.0 | 270 | < th | dose independent | sin | 14 | NA |
| 237 | 92.81 | temperature | 25.0 | 270 | > th | dose independent | sin | 13 | NA |
| 271 | 93.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 276 | 93.11 | wind | 5.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 354 | 93.57 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 9 |
| 383 | 93.73 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 396 | 93.82 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 409 | 93.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 435 | 94.01 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 450 | 94.06 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 459 | 94.12 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 470 | 94.13 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 490 | 94.24 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 492 | 94.26 | radiation | 1.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 510 | 94.33 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 558 | 94.50 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 584 | 94.57 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 585 | 94.57 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 593 | 94.60 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 11 | 16 |
| 596 | 94.61 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 631 | 94.76 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 654 | 94.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 657 | 94.87 | radiation | 1.0 | 720 | < th | dose independent | sin | 17 | NA |
| 693 | 94.97 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 704 | 95.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 706 | 95.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 747 | 95.17 | temperature | 25.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 754 | 95.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 757 | 95.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 766 | 95.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 790 | 95.29 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 833 | 95.43 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 840 | 95.43 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 852 | 95.49 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 865 | 95.53 | radiation | 1.0 | 720 | > th | dose independent | sin | 16 | NA |
| 867 | 95.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 872 | 95.54 | radiation | 1.0 | 720 | > th | dose independent | sin | 18 | NA |
| 893 | 95.60 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 898 | 95.61 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 905 | 95.63 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 908 | 95.64 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 916 | 95.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 926 | 95.69 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 942 | 95.70 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 955 | 95.74 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 958 | 95.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 962 | 95.74 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 968 | 95.74 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 969 | 95.74 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 978 | 95.74 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 15 |