Os06g0662700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pollen allergen Lol p2 family protein.
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Os06g0662700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pollen allergen Lol p2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.27 | 0.676 | 2.99 | 0.357 | 0.21 | -0.228 | 0.478 | 5.57 | 0.00795 | 7.16 | 0.1244 | 4 | -- | -- |
| 219.17 | 0.695 | 3.01 | 0.331 | 0.179 | 0.775 | 0.537 | -- | 0.017 | 6.19 | 0.08609 | 2 | -- | -- |
| 207.86 | 0.671 | 2.99 | 0.365 | 0.211 | -0.215 | -- | 5.52 | 0.00629 | 7.28 | 0.1491 | 4 | -- | -- |
| 219.31 | 0.69 | 3.01 | 0.336 | 0.184 | 0.873 | -- | -- | 0.0198 | 7.34 | 0.05278 | 2 | -- | -- |
| 210.2 | 0.675 | 3 | 0.368 | -- | -0.148 | -- | 5.36 | 0.0122 | -- | 0.1164 | 4 | -- | -- |
| 224.1 | 0.702 | 3.01 | 0.382 | 0.197 | -- | 0.718 | -- | 0.00317 | 5.25 | -- | -- | -- | -- |
| 225.19 | 0.703 | 3.01 | 0.384 | 0.212 | -- | -- | -- | 0.000311 | 6.29 | -- | -- | -- | -- |
| 221.12 | 0.693 | 3.01 | 0.338 | -- | 0.895 | -- | -- | 0.0234 | -- | 0.0428 | 2 | -- | -- |
| 222.26 | 0.694 | 3.02 | -- | 0.186 | 0.936 | -- | -- | -0.0157 | 7.3 | 0.081 | 2 | -- | -- |
| 227.51 | 0.705 | 3.02 | 0.39 | -- | -- | -- | -- | 0.00489 | -- | -- | -- | -- | -- |
| 229.08 | 0.708 | 3.02 | -- | 0.217 | -- | -- | -- | -0.0425 | 6.19 | -- | -- | -- | -- |
| 224.1 | 0.697 | 3.02 | -- | -- | 0.958 | -- | -- | -0.0125 | -- | 0.06268 | 2 | -- | -- |
| 231.52 | 0.71 | 3.03 | -- | -- | -- | -- | -- | -0.0384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.40 | wind | 1 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 2 | 202.13 | humidity | 90 | 10 | > th | dose independent | rect. | 13 | 1 |
| 10 | 202.13 | humidity | 90 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 18 | 202.14 | humidity | 90 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 20 | 202.15 | humidity | 90 | 90 | > th | dose independent | rect. | 13 | 1 |
| 39 | 203.18 | wind | 1 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 44 | 204.59 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 9 |
| 49 | 205.05 | temperature | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 60 | 206.15 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 14 |
| 72 | 206.30 | wind | 1 | 10 | < th | dose independent | rect. | 24 | 2 |
| 74 | 206.45 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 1 |
| 77 | 206.56 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 16 |
| 93 | 206.94 | wind | 3 | 90 | > th | dose independent | rect. | 2 | 1 |
| 102 | 207.29 | wind | 3 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 105 | 207.52 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 108 | 207.72 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 126 | 207.91 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 137 | 208.03 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 143 | 208.23 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 145 | 208.29 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 149 | 208.37 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 18 |
| 151 | 208.44 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 21 |
| 156 | 208.63 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 169 | 209.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 239 | 209.77 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 21 |
| 259 | 209.83 | wind | 3 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 272 | 209.88 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 23 |
| 278 | 209.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 18 |
| 296 | 210.08 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 326 | 210.34 | wind | 1 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 362 | 210.67 | wind | 1 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 397 | 210.79 | radiation | 10 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 406 | 210.81 | wind | 1 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 415 | 210.82 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 419 | 210.83 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 441 | 210.87 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 462 | 210.92 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 12 |
| 482 | 210.96 | wind | 1 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 518 | 211.09 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 523 | 211.11 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 548 | 211.27 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 558 | 211.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 563 | 211.34 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 23 |
| 601 | 211.55 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 603 | 211.56 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 10 |
| 612 | 211.58 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 15 |
| 621 | 211.67 | wind | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 626 | 211.68 | wind | 1 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 645 | 211.76 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 13 |
| 649 | 211.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 11 |
| 674 | 211.87 | wind | 1 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 676 | 211.88 | wind | 1 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 683 | 211.88 | temperature | 25 | 10 | < th | dose dependent | sin | 11 | NA |
| 698 | 211.93 | wind | 1 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 708 | 211.94 | radiation | 10 | 30 | < th | dose dependent | rect. | 11 | 4 |
| 722 | 212.00 | wind | 1 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 737 | 212.06 | wind | 1 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 744 | 212.08 | wind | 1 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 748 | 212.09 | wind | 1 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 812 | 212.19 | temperature | 10 | 90 | > th | dose dependent | sin | 11 | NA |
| 852 | 212.26 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 854 | 212.26 | wind | 1 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 857 | 212.26 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 925 | 212.35 | wind | 1 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 935 | 212.38 | wind | 1 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 989 | 212.51 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 992 | 212.51 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 996 | 212.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 997 | 212.52 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 12 |