Os06g0662300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pollen allergen Lol p2 family protein.
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Os06g0662300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pollen allergen Lol p2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 288.59 | 0.798 | 3.74 | 1.4 | 0.101 | 2.1 | -0.522 | -0.155 | 0.174 | 2.42 | 24.7 | 3439 | -- | -- |
| 288.61 | 0.791 | 3.74 | 1.37 | 0.0968 | 2.1 | -0.507 | -- | 0.165 | 2.32 | 24.7 | 3439 | -- | -- |
| 289.57 | 0.793 | 3.74 | 1.4 | 0.0987 | 2.09 | -- | -0.104 | 0.171 | 2.71 | 24.7 | 3439 | -- | -- |
| 289.55 | 0.793 | 3.74 | 1.38 | 0.128 | 2.09 | -- | -- | 0.156 | 1.96 | 24.77 | 3526 | -- | -- |
| 290.16 | 0.793 | 3.74 | 1.41 | -- | 2.09 | -- | -0.115 | 0.175 | -- | 24.7 | 3439 | -- | -- |
| 397.87 | 0.935 | 3.86 | 0.585 | 0.184 | -- | 0.236 | -- | -0.397 | 8.47 | -- | -- | -- | -- |
| 397.98 | 0.934 | 3.86 | 0.591 | 0.191 | -- | -- | -- | -0.398 | 7.77 | -- | -- | -- | -- |
| 290.15 | 0.793 | 3.73 | 1.38 | -- | 2.08 | -- | -- | 0.194 | -- | 24.68 | 3435 | -- | -- |
| 332.98 | 0.85 | 3.8 | -- | 0.0962 | 1.58 | -- | -- | -0.0917 | 3.23 | 24.64 | 3432 | -- | -- |
| 399.94 | 0.934 | 3.87 | 0.593 | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
| 407.18 | 0.944 | 3.88 | -- | 0.195 | -- | -- | -- | -0.464 | 7.56 | -- | -- | -- | -- |
| 333.51 | 0.851 | 3.8 | -- | -- | 1.61 | -- | -- | -0.0949 | -- | 24.73 | 3436 | -- | -- |
| 409.23 | 0.944 | 3.88 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 4 | 280.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 9 | 281.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 10 | 281.98 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 19 | 282.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 22 | 283.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 24 | 283.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 27 | 283.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 32 | 283.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 50 | 283.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 72 | 284.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 175 | 285.70 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 293 | 287.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 310 | 287.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 322 | 287.34 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 382 | 287.75 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 420 | 287.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 441 | 288.10 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 446 | 288.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 447 | 288.14 | temperature | 20 | 4320 | > th | dose dependent | sin | 14 | NA |
| 533 | 288.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 572 | 288.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 787 | 289.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 19 |