Os06g0662100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0662100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.63 | 0.659 | 5.33 | 0.702 | 1.33 | 0.679 | 0.229 | -0.425 | -0.202 | 11.9 | 91.89 | 1393 | -- | -- |
| 196.95 | 0.654 | 5.33 | 0.685 | 1.32 | 0.693 | 0.187 | -- | -0.216 | 11.9 | 92.45 | 1399 | -- | -- |
| 196.86 | 0.653 | 5.33 | 0.706 | 1.32 | 0.68 | -- | -0.39 | -0.201 | 11.9 | 91.89 | 1393 | -- | -- |
| 197.12 | 0.654 | 5.33 | 0.671 | 1.32 | 0.709 | -- | -- | -0.214 | 11.9 | 92.45 | 1397 | -- | -- |
| 264.37 | 0.757 | 5.38 | 0.652 | -- | 1.47 | -- | -0.448 | -0.201 | -- | 84.04 | 912 | -- | -- |
| 204.65 | 0.671 | 5.36 | 0.717 | 1.34 | -- | 0.238 | -- | -0.357 | 11.8 | -- | -- | -- | -- |
| 204.89 | 0.67 | 5.36 | 0.727 | 1.34 | -- | -- | -- | -0.356 | 11.8 | -- | -- | -- | -- |
| 263.82 | 0.756 | 5.34 | 0.524 | -- | 1.55 | -- | -- | -0.153 | -- | 83.93 | 928 | -- | -- |
| 207.89 | 0.672 | 5.34 | -- | 1.34 | 0.741 | -- | -- | -0.253 | 11.9 | 90.87 | 1496 | -- | -- |
| 317.36 | 0.832 | 5.39 | 0.687 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 218.82 | 0.692 | 5.38 | -- | 1.33 | -- | -- | -- | -0.437 | 11.8 | -- | -- | -- | -- |
| 270.86 | 0.767 | 5.35 | -- | -- | 1.63 | -- | -- | -0.19 | -- | 84.72 | 928 | -- | -- |
| 329.82 | 0.848 | 5.41 | -- | -- | -- | -- | -- | -0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.31 | radiation | 20 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 2 | 191.42 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 3 | 192.05 | temperature | 15 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 5 | 192.40 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 6 | 192.45 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 8 | 192.49 | temperature | 15 | 14400 | < th | dose dependent | rect. | 13 | 15 |
| 11 | 192.50 | temperature | 15 | 14400 | < th | dose dependent | sin | 15 | NA |
| 14 | 192.51 | temperature | 15 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 15 | 192.51 | temperature | 15 | 14400 | < th | dose dependent | rect. | 15 | 12 |
| 20 | 192.51 | temperature | 15 | 14400 | < th | dose dependent | rect. | 12 | 19 |
| 23 | 192.52 | temperature | 15 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 88 | 192.57 | temperature | 15 | 14400 | < th | dose dependent | no | NA | NA |
| 101 | 192.57 | temperature | 15 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 103 | 192.57 | temperature | 15 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 119 | 192.58 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 125 | 192.59 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 148 | 192.60 | temperature | 15 | 14400 | < th | dose dependent | rect. | 24 | 19 |
| 161 | 192.61 | temperature | 15 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 171 | 192.63 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 172 | 192.63 | temperature | 15 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 208 | 192.69 | temperature | 15 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 217 | 192.70 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 237 | 192.72 | temperature | 15 | 14400 | < th | dose dependent | sin | 4 | NA |
| 249 | 192.74 | temperature | 15 | 14400 | < th | dose dependent | sin | 7 | NA |
| 274 | 192.79 | temperature | 15 | 14400 | < th | dose dependent | rect. | 2 | 7 |
| 279 | 192.80 | temperature | 15 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 297 | 192.84 | radiation | 10 | 270 | < th | dose independent | sin | 12 | NA |
| 402 | 193.28 | radiation | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 411 | 193.35 | radiation | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 425 | 193.49 | radiation | 20 | 270 | > th | dose independent | rect. | 14 | 19 |
| 426 | 193.52 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 8 |
| 429 | 193.56 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 436 | 193.61 | radiation | 10 | 90 | < th | dose independent | rect. | 19 | 22 |
| 439 | 193.64 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 446 | 193.71 | temperature | 15 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 455 | 193.80 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 461 | 193.82 | radiation | 40 | 270 | < th | dose dependent | sin | 12 | NA |
| 463 | 193.82 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 464 | 193.83 | humidity | 90 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 468 | 193.85 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 474 | 193.89 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 483 | 193.93 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 17 |
| 507 | 194.01 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 5 |
| 535 | 194.08 | radiation | 20 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 571 | 194.22 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 14 |
| 577 | 194.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 591 | 194.27 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 612 | 194.29 | humidity | 90 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 625 | 194.33 | humidity | 90 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 640 | 194.38 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 18 |
| 649 | 194.39 | wind | 7 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 653 | 194.40 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 20 |
| 661 | 194.42 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 8 |
| 667 | 194.44 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 7 |
| 678 | 194.46 | radiation | 20 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 689 | 194.49 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 690 | 194.49 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 737 | 194.57 | temperature | 25 | 720 | > th | dose independent | sin | 13 | NA |
| 777 | 194.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 780 | 194.61 | radiation | 10 | 720 | < th | dose independent | rect. | 24 | 11 |
| 799 | 194.64 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 4 | NA |
| 827 | 194.67 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 839 | 194.69 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 4 | NA |
| 842 | 194.69 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 845 | 194.69 | radiation | 30 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 873 | 194.73 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 929 | 194.79 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 8 |
| 955 | 194.82 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 965 | 194.83 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 10 |