Os06g0662000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar H+-ATPase subunit A (Fragment).
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Os06g0662000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar H+-ATPase subunit A (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.39 | 0.136 | 12.4 | -0.183 | 0.12 | 0.999 | 0.0236 | 1.67 | -0.0529 | 7.61 | 19.64 | 4055 | -- | -- |
| 9.12 | 0.141 | 12.3 | 0.131 | 0.123 | 0.481 | 0.0027 | -- | 0.0627 | 7.39 | 24.45 | 37155 | -- | -- |
| 8.38 | 0.135 | 12.4 | -0.178 | 0.121 | 1.08 | -- | 1.84 | -0.055 | 7.57 | 19.4 | 4047 | -- | -- |
| 9.09 | 0.14 | 12.3 | 0.101 | 0.112 | 0.448 | -- | -- | 0.0536 | 7.82 | 24.26 | 37286 | -- | -- |
| 9.14 | 0.141 | 12.4 | -0.187 | -- | 1.02 | -- | 1.72 | -0.0535 | -- | 19.4 | 3864 | -- | -- |
| 10.97 | 0.155 | 12.3 | -0.325 | 0.113 | -- | 0.0264 | -- | -0.108 | 8.18 | -- | -- | -- | -- |
| 10.97 | 0.155 | 12.3 | -0.324 | 0.114 | -- | -- | -- | -0.108 | 8.16 | -- | -- | -- | -- |
| 9.76 | 0.146 | 12.3 | 0.104 | -- | 0.444 | -- | -- | 0.0582 | -- | 24.98 | 38195 | -- | -- |
| 9.11 | 0.141 | 12.3 | -- | 0.112 | 0.367 | -- | -- | 0.0331 | 7.89 | 50.11 | 37707 | -- | -- |
| 11.68 | 0.16 | 12.3 | -0.323 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 13.74 | 0.173 | 12.3 | -- | 0.112 | -- | -- | -- | -0.0718 | 8.37 | -- | -- | -- | -- |
| 9.76 | 0.146 | 12.3 | -- | -- | 0.364 | -- | -- | 0.0344 | -- | 82.3 | 38149 | -- | -- |
| 14.43 | 0.177 | 12.3 | -- | -- | -- | -- | -- | -0.0707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 3 | 7.71 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 4 | 7.71 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 6 | 7.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 11 | 7.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 15 |
| 22 | 7.74 | wind | 1 | 14400 | < th | dose dependent | sin | 3 | NA |
| 26 | 7.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 13 |
| 37 | 7.75 | wind | 1 | 14400 | > th | dose independent | sin | 3 | NA |
| 53 | 7.76 | wind | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 73 | 7.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 10 |
| 89 | 7.78 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 106 | 7.79 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 112 | 7.79 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 14 |
| 118 | 7.79 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 119 | 7.79 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 149 | 7.81 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 202 | 7.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 209 | 7.83 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 238 | 7.84 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 263 | 7.84 | wind | 3 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 270 | 7.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 310 | 7.85 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 358 | 7.87 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 359 | 7.87 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 380 | 7.88 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 412 | 7.89 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 432 | 7.89 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 433 | 7.89 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 443 | 7.89 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 460 | 7.90 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 472 | 7.90 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 21 |
| 497 | 7.91 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 501 | 7.91 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 519 | 7.92 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 21 |
| 520 | 7.92 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 526 | 7.92 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 527 | 7.92 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 532 | 7.93 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 533 | 7.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 534 | 7.93 | radiation | 30 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 538 | 7.93 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 591 | 7.93 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 594 | 7.94 | radiation | 30 | 43200 | < th | dose independent | sin | 16 | NA |
| 653 | 7.95 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 654 | 7.95 | radiation | 20 | 43200 | < th | dose independent | sin | 14 | NA |
| 663 | 7.95 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 737 | 7.95 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 740 | 7.95 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 819 | 7.96 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 822 | 7.96 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 823 | 7.96 | radiation | 20 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 825 | 7.96 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 837 | 7.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 874 | 7.97 | radiation | 20 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 886 | 7.98 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 894 | 7.98 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 895 | 7.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 942 | 7.98 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 956 | 7.98 | radiation | 1 | 43200 | > th | dose dependent | rect. | 12 | 19 |
| 958 | 7.98 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 19 |
| 971 | 7.99 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 972 | 7.99 | humidity | 70 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 976 | 7.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 977 | 7.99 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 7 |