Os06g0661800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cryptochrome dash (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os06g0661800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cryptochrome dash (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 255.49 | 0.751 | 8.85 | -2.83 | 2.29 | 1.36 | 1.87 | 0.731 | -1.1 | 7.32 | 69.32 | 655 | -- | -- |
| 255.9 | 0.745 | 8.86 | -2.83 | 2.26 | 1.43 | 1.82 | -- | -1.09 | 7.3 | 67.6 | 647 | -- | -- |
| 263.37 | 0.756 | 8.86 | -2.77 | 2.43 | 1.47 | -- | 0.00618 | -1.14 | 7.18 | 75.79 | 642 | -- | -- |
| 263.15 | 0.756 | 8.87 | -2.79 | 2.47 | 1.45 | -- | -- | -1.17 | 7.18 | 77.6 | 645 | -- | -- |
| 433.07 | 0.969 | 8.94 | -2.66 | -- | 1.11 | -- | 0.58 | -1.19 | -- | 87 | 1382 | -- | -- |
| 295.01 | 0.805 | 8.91 | -2.63 | 1.78 | -- | 0.797 | -- | -1.24 | 7.3 | -- | -- | -- | -- |
| 296.59 | 0.806 | 8.91 | -2.62 | 1.79 | -- | -- | -- | -1.24 | 7.2 | -- | -- | -- | -- |
| 433.51 | 0.97 | 8.95 | -2.72 | -- | 1.16 | -- | -- | -1.2 | -- | 87 | 1373 | -- | -- |
| 455.59 | 0.994 | 8.83 | -- | 2.42 | 1.32 | -- | -- | -0.97 | 7.36 | 136.4 | 648 | -- | -- |
| 465.89 | 1.01 | 8.95 | -2.58 | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
| 476.89 | 1.02 | 8.84 | -- | 1.76 | -- | -- | -- | -0.949 | 7.3 | -- | -- | -- | -- |
| 605.17 | 1.15 | 8.97 | -- | -- | 1.64 | -- | -- | -1.29 | -- | 124.5 | 5774 | -- | -- |
| 641.87 | 1.18 | 8.88 | -- | -- | -- | -- | -- | -0.922 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.32 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 2 | 247.36 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 4 | 247.51 | humidity | 60.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 5 | 247.94 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 12 |
| 6 | 248.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 23 |
| 7 | 248.05 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 23 |
| 9 | 248.09 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 14 |
| 10 | 248.10 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 13 | 248.26 | temperature | 30.0 | 720 | < th | dose independent | sin | 22 | NA |
| 14 | 248.54 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 23 |
| 19 | 249.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 8 |
| 20 | 249.09 | humidity | 60.0 | 720 | > th | dose independent | rect. | 13 | 15 |
| 22 | 249.15 | humidity | 60.0 | 720 | > th | dose independent | rect. | 13 | 8 |
| 23 | 249.16 | humidity | 60.0 | 720 | > th | dose independent | rect. | 13 | 10 |
| 30 | 249.54 | humidity | 60.0 | 720 | > th | dose independent | sin | 19 | NA |
| 32 | 249.56 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 35 | 249.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 6 |
| 45 | 250.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 61 | 250.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 67 | 250.99 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 10 |
| 68 | 250.99 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 17 |
| 72 | 251.06 | humidity | 60.0 | 720 | > th | dose independent | rect. | 7 | 16 |
| 80 | 251.31 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 85 | 251.41 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 86 | 251.45 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 21 |
| 91 | 251.57 | humidity | 60.0 | 720 | > th | dose independent | rect. | 7 | 10 |
| 95 | 251.78 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 96 | 251.84 | humidity | 60.0 | 720 | > th | dose independent | rect. | 2 | 16 |
| 97 | 251.91 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 98 | 251.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 107 | 252.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 122 | 252.24 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 133 | 252.31 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 137 | 252.35 | humidity | 50.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 140 | 252.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 146 | 252.47 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 149 | 252.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 150 | 252.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 153 | 252.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 160 | 252.54 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 3 |
| 163 | 252.57 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 12 | 5 |
| 168 | 252.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 170 | 252.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 171 | 252.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 173 | 252.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 174 | 252.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 175 | 252.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 191 | 252.70 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 192 | 252.70 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 5 |
| 195 | 252.70 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 221 | 252.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 232 | 252.88 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 251 | 252.98 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 23 | NA |
| 290 | 253.24 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 339 | 253.68 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 343 | 253.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 15 |
| 353 | 253.79 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 376 | 253.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 378 | 253.96 | humidity | 60.0 | 720 | > th | dose independent | sin | 0 | NA |
| 379 | 253.96 | humidity | 60.0 | 720 | > th | dose independent | rect. | 22 | 19 |
| 432 | 254.27 | humidity | 60.0 | 720 | > th | dose independent | rect. | 20 | 21 |
| 447 | 254.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 453 | 254.36 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 487 | 254.51 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 9 |
| 519 | 254.64 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 524 | 254.66 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 593 | 255.06 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 22 | NA |
| 595 | 255.06 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 22 | NA |
| 598 | 255.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 13 | 14 |
| 605 | 255.14 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 618 | 255.23 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 636 | 255.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 646 | 255.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 680 | 255.49 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 693 | 255.55 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 729 | 255.75 | humidity | 70.0 | 270 | > th | dose independent | sin | 12 | NA |
| 775 | 255.86 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 21 |
| 845 | 256.19 | humidity | 70.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 873 | 256.27 | temperature | 30.0 | 270 | < th | dose independent | sin | 12 | NA |
| 926 | 256.49 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 23 |
| 961 | 256.52 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 963 | 256.54 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 992 | 256.73 | temperature | 30.0 | 720 | > th | dose independent | rect. | 11 | 6 |
| 999 | 256.75 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 18 |