Os06g0661600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHP-type domain containing protein.
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Os06g0661600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.8 | 0.378 | 12.1 | -0.476 | 0.129 | -0.846 | -0.783 | 0.01 | -0.173 | 5.58 | 26.25 | 212 | -- | -- |
| 64.8 | 0.375 | 12.1 | -0.476 | 0.131 | -0.846 | -0.781 | -- | -0.172 | 5.61 | 26.3 | 216 | -- | -- |
| 66.13 | 0.379 | 12.1 | -0.426 | 0.127 | -0.837 | -- | -0.21 | -0.16 | 5.02 | 26.31 | 211 | -- | -- |
| 66.25 | 0.379 | 12.1 | -0.482 | 0.135 | -0.859 | -- | -- | -0.174 | 4.85 | 26.42 | 209 | -- | -- |
| 66.67 | 0.38 | 12.1 | -0.405 | -- | -0.827 | -- | -0.349 | -0.136 | -- | 25.39 | 194 | -- | -- |
| 75.67 | 0.408 | 12.1 | -0.257 | 0.0363 | -- | 0.799 | -- | 0.0125 | 17.6 | -- | -- | -- | -- |
| 76.98 | 0.411 | 12.1 | -0.259 | 0.0754 | -- | -- | -- | 0.0166 | 13.7 | -- | -- | -- | -- |
| 66.85 | 0.381 | 12.1 | -0.46 | -- | -0.802 | -- | -- | -0.148 | -- | 25.4 | 192 | -- | -- |
| 71.7 | 0.394 | 12.1 | -- | 0.0739 | -0.664 | -- | -- | -0.0835 | 4.49 | 26.17 | 176 | -- | -- |
| 77.33 | 0.411 | 12.1 | -0.262 | -- | -- | -- | -- | 0.0149 | -- | -- | -- | -- | -- |
| 78.75 | 0.415 | 12.1 | -- | 0.0801 | -- | -- | -- | 0.0454 | 13.8 | -- | -- | -- | -- |
| 71.89 | 0.395 | 12.1 | -- | -- | -0.636 | -- | -- | -0.0716 | -- | 25.7 | 174 | -- | -- |
| 79.14 | 0.415 | 12.1 | -- | -- | -- | -- | -- | 0.044 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.44 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 3 | 59.67 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 12 | 60.88 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 15 | 61.04 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 16 | 61.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 21 | 61.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 37 | 61.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 38 | 61.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 67 | 62.59 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 19 |
| 100 | 63.14 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 21 |
| 129 | 63.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 141 | 63.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 165 | 63.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 187 | 63.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 345 | 64.55 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 17 |
| 385 | 64.70 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 20 |
| 388 | 64.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 404 | 64.75 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 417 | 64.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 420 | 64.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 422 | 64.79 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 426 | 64.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 438 | 64.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 447 | 64.84 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 17 |
| 454 | 64.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 459 | 64.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 466 | 64.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 467 | 64.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 471 | 64.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 472 | 64.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 474 | 64.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 483 | 64.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 487 | 64.91 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 495 | 64.92 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 503 | 64.93 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 521 | 64.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 543 | 64.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 580 | 65.00 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 18 |
| 610 | 65.03 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |
| 643 | 65.06 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 689 | 65.09 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 703 | 65.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 830 | 65.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 846 | 65.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 855 | 65.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 933 | 65.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 945 | 65.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 952 | 65.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 982 | 65.28 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |