Os06g0661500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0661500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.24 | 0.336 | 11.7 | 0.512 | 1.58 | 2.95 | 2.25 | 2.8 | 0.0881 | 18.3 | 0.49 | 711 | -- | -- |
| 52.63 | 0.338 | 11.6 | 0.56 | 1.46 | 2.77 | 0.151 | -- | 0.138 | 18.1 | 0.5956 | 690 | -- | -- |
| 53.37 | 0.34 | 11.7 | 0.485 | 1.64 | 2.93 | -- | 0.142 | 0.0879 | 17.5 | 1.28 | 653 | -- | -- |
| 52.06 | 0.336 | 11.6 | 0.567 | 1.59 | 2.83 | -- | -- | 0.137 | 17.4 | 0.56 | 641 | -- | -- |
| 69.62 | 0.389 | 11.7 | 0.409 | -- | 1.13 | -- | 2.25 | 0.0712 | -- | 6.316 | 559 | -- | -- |
| 63.91 | 0.375 | 11.6 | 0.349 | 0.908 | -- | 0.373 | -- | -0.00303 | 4.41 | -- | -- | -- | -- |
| 64.29 | 0.375 | 11.6 | 0.346 | 0.911 | -- | -- | -- | -0.00502 | 4.42 | -- | -- | -- | -- |
| 56.58 | 0.35 | 11.7 | 0.416 | -- | 1.01 | -- | -- | 0.0814 | -- | 2.22 | 561 | -- | -- |
| 58.57 | 0.356 | 11.6 | -- | 1.05 | 2.22 | -- | -- | 0.0383 | 17.4 | 1.29 | 634 | -- | -- |
| 108.73 | 0.487 | 11.6 | 0.382 | -- | -- | -- | -- | 0.019 | -- | -- | -- | -- | -- |
| 67.44 | 0.384 | 11.6 | -- | 0.917 | -- | -- | -- | -0.0436 | 4.42 | -- | -- | -- | -- |
| 59.94 | 0.361 | 11.6 | -- | -- | 1.05 | -- | -- | 0.0237 | -- | 2.21 | 564 | -- | -- |
| 112.58 | 0.495 | 11.6 | -- | -- | -- | -- | -- | -0.0233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 2 | 50.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 3 | 50.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 7 | 50.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 12 | 51.38 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 14 | 51.51 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 14 |
| 17 | 51.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 23 | 51.70 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 21 |
| 26 | 51.77 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 19 |
| 27 | 51.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 29 | 51.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 32 | 51.81 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 19 |
| 54 | 52.02 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 55 | 52.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 70 | 52.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 77 | 52.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 94 | 52.26 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 109 | 52.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 115 | 52.47 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 7 |
| 118 | 52.48 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 22 |
| 146 | 52.63 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 155 | 52.69 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 157 | 52.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 176 | 52.81 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 197 | 53.00 | temperature | 10 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 201 | 53.04 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 215 | 53.07 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 2 |
| 226 | 53.12 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 230 | 53.16 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 232 | 53.16 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 23 |
| 237 | 53.17 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 257 | 53.22 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 286 | 53.34 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 17 |
| 294 | 53.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 311 | 53.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 332 | 53.48 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 342 | 53.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 4 |
| 348 | 53.55 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 350 | 53.56 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 351 | 53.57 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 17 |
| 376 | 53.63 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 392 | 53.65 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 453 | 53.71 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 475 | 53.81 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 527 | 53.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 554 | 54.04 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 567 | 54.09 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 13 |
| 594 | 54.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 601 | 54.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 663 | 54.40 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 11 |
| 721 | 54.55 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 6 |
| 849 | 54.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 885 | 54.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 903 | 54.76 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 20 |
| 930 | 54.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 931 | 54.80 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 13 |
| 947 | 54.82 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 956 | 54.85 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 12 |
| 962 | 54.86 | humidity | 70 | 720 | > th | dose independent | rect. | 8 | 21 |
| 970 | 54.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 990 | 54.91 | humidity | 60 | 90 | > th | dose dependent | rect. | 18 | 2 |