Os06g0661100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0661100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.93	(0.0446)	R²	:	0.128
β₁	:	0.413	(0.165)	R²_dD	:	0.0111	R²_D	:	0.0113
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.44	(0.839)	R²_dE	:	0.31	R²_E	:	-0.153
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	13.3	(1.86)	R²_dD*E	:	0.248	R²_D*E	:	-0.172
γ₁	:	0.0588	(0.0949)	R²_dN8	:	0.00102	R²_N8	:	-0.00232
σ	:	0.826
deviance	:	314.29
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	23.48
memory length	:	13
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	12
open length of G	:	4

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
316.07	0.835	2.93	0.368	0.000502	4.43	-0.602	9.98	0.0582	19	24.28	14	12	3.98
344.66	0.865	2.9	0.447	0.0378	1.76	0.731	--	0.0718	15.5	26.31	34	12	5.45
316.2	0.828	2.92	0.403	0.0109	4.38	--	9.71	0.0885	7.19	24.05	13	12	3.99
345.58	0.872	2.9	0.457	0.051	1.76	--	--	0.0672	13.8	26.21	34	12	5.38
314.29	0.826	2.93	0.413	--	5.44	--	13.3	0.0588	--	23.48	13	12	4
353.97	0.882	2.91	0.391	0.113	--	0.533	--	0.0341	13.4	--	--	--	--
354.99	0.882	2.9	0.41	0.126	--	--	--	0.0379	15	--	--	--	--
345.74	0.87	2.9	0.456	--	1.8	--	--	0.0667	--	26.21	34	12	5.38
351.06	0.877	2.91	--	0.0468	1.66	--	--	0.0149	13.7	26.21	34	12	5.38
355.91	0.882	2.91	0.405	--	--	--	--	0.0347	--	--	--	--	--
359.43	0.887	2.92	--	0.118	--	--	--	-0.00776	14.9	--	--	--	--
351.19	0.876	2.91	--	--	1.69	--	--	0.0146	--	26.21	34	12	5.38
360.23	0.886	2.92	--	--	--	--	--	-0.0103	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	318.94	temperature	25.0	10	< th	dose dependent	rect.	12	4
10	324.85	precipitation	0.1	90	> th	dose independent	rect.	13	1
13	324.85	precipitation	0.1	90	> th	dose dependent	rect.	13	1
16	325.01	temperature	25.0	10	< th	dose independent	rect.	13	3
17	325.08	temperature	25.0	270	< th	dose independent	rect.	12	1
24	325.51	radiation	10.0	10	< th	dose dependent	rect.	14	1
33	325.86	radiation	10.0	10	< th	dose independent	rect.	14	1
35	326.24	radiation	10.0	10	< th	dose independent	rect.	12	3
36	326.29	radiation	10.0	90	< th	dose dependent	rect.	12	3
41	326.73	radiation	10.0	10	< th	dose dependent	rect.	12	3
43	326.88	radiation	10.0	270	< th	dose independent	rect.	11	2
66	327.91	atmosphere	1005.0	30	> th	dose dependent	rect.	12	4
86	329.09	humidity	80.0	90	< th	dose independent	rect.	22	1
98	329.36	humidity	80.0	90	< th	dose dependent	rect.	22	1
100	329.40	atmosphere	1010.0	270	> th	dose independent	rect.	12	1
117	329.64	humidity	80.0	90	< th	dose independent	rect.	24	1
118	329.64	humidity	80.0	10	< th	dose independent	rect.	24	2
122	329.64	humidity	80.0	90	< th	dose dependent	rect.	24	1
123	329.64	humidity	80.0	10	< th	dose dependent	rect.	24	2
178	331.15	wind	3.0	90	> th	dose dependent	rect.	4	1
194	332.57	atmosphere	1005.0	30	> th	dose dependent	rect.	12	2
215	332.90	wind	3.0	90	> th	dose independent	rect.	4	1
221	332.99	humidity	50.0	10	> th	dose independent	rect.	12	1
227	333.06	wind	9.0	10	< th	dose dependent	rect.	12	1
235	333.18	wind	5.0	30	< th	dose dependent	rect.	12	1
237	333.19	atmosphere	1005.0	90	< th	dose dependent	rect.	20	1
238	333.23	atmosphere	1005.0	270	> th	dose dependent	rect.	12	1
249	333.62	atmosphere	1010.0	10	< th	dose independent	rect.	12	1
251	333.70	radiation	10.0	10	> th	dose independent	rect.	12	1
253	333.77	wind	9.0	10	< th	dose independent	rect.	12	1
254	333.77	temperature	10.0	10	> th	dose independent	rect.	12	1
256	333.77	atmosphere	995.0	10	> th	dose independent	rect.	12	1
259	333.77	precipitation	0.1	10	< th	dose independent	rect.	12	1
260	333.77	temperature	10.0	10	> th	dose independent	rect.	13	23
261	333.77	precipitation	0.1	10	< th	dose dependent	rect.	12	1
266	333.82	atmosphere	1015.0	10	< th	dose dependent	rect.	12	1
268	333.92	wind	1.0	10	> th	dose independent	rect.	12	1
269	333.92	atmosphere	1000.0	10	> th	dose independent	rect.	13	23
270	333.98	humidity	90.0	10	< th	dose independent	rect.	12	1
279	334.35	temperature	10.0	10	> th	dose dependent	rect.	12	1
287	334.66	temperature	20.0	1440	> th	dose independent	rect.	4	1
288	334.66	temperature	20.0	1440	< th	dose independent	rect.	5	1
299	334.78	temperature	20.0	4320	> th	dose independent	rect.	22	1
307	334.98	wind	5.0	10	< th	dose independent	rect.	12	1
316	335.17	temperature	30.0	10	< th	dose independent	rect.	13	23
342	335.70	atmosphere	995.0	10	> th	dose dependent	rect.	12	1
343	335.71	humidity	50.0	10	> th	dose dependent	rect.	12	1
345	335.73	temperature	30.0	720	< th	dose dependent	rect.	4	2
352	335.84	radiation	1.0	10	> th	dose dependent	rect.	12	1
381	336.13	temperature	20.0	720	< th	dose independent	rect.	4	18
434	336.99	temperature	25.0	10	> th	dose independent	rect.	21	1
435	337.02	humidity	90.0	30	< th	dose dependent	rect.	12	1
453	337.22	temperature	20.0	4320	< th	dose independent	rect.	22	1
478	337.46	precipitation	0.1	10	< th	dose independent	rect.	13	23
480	337.46	precipitation	0.1	10	< th	dose dependent	rect.	13	23
486	337.50	wind	1.0	30	> th	dose dependent	rect.	12	1
500	337.58	temperature	30.0	30	< th	dose dependent	rect.	12	22
541	337.94	temperature	10.0	30	> th	dose dependent	rect.	13	23
561	338.12	temperature	25.0	10	< th	dose dependent	rect.	5	12
565	338.15	temperature	20.0	1440	> th	dose dependent	rect.	2	3
567	338.16	temperature	20.0	1440	> th	dose dependent	rect.	3	1
607	338.32	temperature	25.0	90	< th	dose independent	rect.	12	7
628	338.41	humidity	80.0	10	> th	dose dependent	rect.	14	1
640	338.45	radiation	40.0	10	> th	dose dependent	rect.	10	1
646	338.48	temperature	10.0	1440	> th	dose independent	rect.	13	1
651	338.48	atmosphere	995.0	1440	> th	dose independent	rect.	13	1
656	338.48	temperature	10.0	1440	> th	dose independent	rect.	14	23
673	338.57	temperature	25.0	90	< th	dose independent	rect.	12	11
692	338.69	temperature	30.0	30	< th	dose dependent	rect.	13	19
706	338.77	temperature	20.0	720	> th	dose independent	rect.	3	19
715	338.88	temperature	20.0	270	< th	dose dependent	rect.	19	11
716	338.89	temperature	20.0	720	> th	dose independent	rect.	5	17
719	338.89	temperature	20.0	270	< th	dose dependent	rect.	16	14
734	338.91	temperature	20.0	4320	< th	dose dependent	rect.	1	1
755	339.02	temperature	20.0	270	< th	dose dependent	rect.	2	21
757	339.05	atmosphere	1015.0	4320	< th	dose independent	rect.	18	2
784	339.16	wind	9.0	10	< th	dose independent	rect.	13	23
796	339.22	temperature	25.0	720	< th	dose dependent	rect.	4	20
798	339.23	atmosphere	1005.0	30	> th	dose dependent	rect.	12	9
799	339.23	atmosphere	995.0	30	> th	dose dependent	rect.	5	11
801	339.25	atmosphere	1015.0	4320	> th	dose independent	rect.	10	1
807	339.28	atmosphere	1015.0	4320	< th	dose independent	rect.	15	5
809	339.29	atmosphere	1015.0	4320	< th	dose independent	rect.	11	1
815	339.31	atmosphere	1015.0	4320	> th	dose independent	rect.	10	10
819	339.32	humidity	90.0	30	< th	dose dependent	rect.	22	8
820	339.32	atmosphere	1015.0	4320	> th	dose dependent	rect.	10	10
824	339.33	atmosphere	1015.0	4320	> th	dose dependent	rect.	10	1
828	339.34	atmosphere	1015.0	4320	< th	dose independent	rect.	10	9
831	339.34	temperature	30.0	1440	< th	dose dependent	rect.	1	1
838	339.35	atmosphere	1015.0	4320	> th	dose dependent	rect.	10	6
863	339.40	humidity	90.0	1440	< th	dose independent	rect.	4	2
872	339.41	temperature	20.0	30	> th	dose dependent	rect.	11	18
942	339.52	atmosphere	1015.0	4320	< th	dose independent	rect.	14	2
982	339.60	temperature	20.0	30	> th	dose dependent	rect.	11	22