Os06g0661000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant MuDR transposase domain containing protein.
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Os06g0661000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant MuDR transposase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.77 | 0.501 | 2.88 | 0.0968 | 0.0405 | 4.35 | 0.83 | 3.94 | -0.00619 | 17.9 | 10.2 | 62 | -- | -- |
| 113.97 | 0.497 | 2.87 | 0.0638 | 0.0513 | 3.49 | 0.814 | -- | 0.00598 | 17.2 | 10.2 | 61 | -- | -- |
| 115.32 | 0.5 | 2.88 | 0.0892 | 0.0649 | 4.35 | -- | 4.42 | -0.0054 | 15 | 10.2 | 64 | -- | -- |
| 115.49 | 0.501 | 2.87 | 0.0718 | 0.0598 | 3.29 | -- | -- | -0.00307 | 15.6 | 10.2 | 64 | -- | -- |
| 115.55 | 0.501 | 2.88 | 0.0875 | -- | 4.35 | -- | 4.3 | -0.00553 | -- | 10.2 | 64 | -- | -- |
| 130.46 | 0.535 | 2.88 | -0.0358 | 0.0984 | -- | 0.548 | -- | -0.0424 | 17.7 | -- | -- | -- | -- |
| 130.9 | 0.536 | 2.88 | -0.0371 | 0.122 | -- | -- | -- | -0.0394 | 15.4 | -- | -- | -- | -- |
| 115.7 | 0.501 | 2.87 | 0.0716 | -- | 3.31 | -- | -- | -0.0034 | -- | 10.2 | 64 | -- | -- |
| 115.62 | 0.501 | 2.87 | -- | 0.0603 | 3.22 | -- | -- | -0.00996 | 15.1 | 10.2 | 61 | -- | -- |
| 131.73 | 0.536 | 2.88 | -0.0423 | -- | -- | -- | -- | -0.0426 | -- | -- | -- | -- | -- |
| 130.93 | 0.535 | 2.88 | -- | 0.123 | -- | -- | -- | -0.0352 | 15.4 | -- | -- | -- | -- |
| 115.83 | 0.501 | 2.87 | -- | -- | 3.27 | -- | -- | -0.0109 | -- | 10.2 | 62 | -- | -- |
| 131.78 | 0.536 | 2.88 | -- | -- | -- | -- | -- | -0.0379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.38 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 11 | 108.38 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 71 | 119.29 | humidity | 70.0 | 10 | < th | dose independent | rect. | 15 | 3 |
| 102 | 119.64 | humidity | 70.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 161 | 120.73 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 172 | 120.73 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 187 | 120.92 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 17 | 16 |
| 204 | 121.32 | humidity | 70.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 233 | 121.56 | humidity | 80.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 235 | 121.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 299 | 122.23 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 22 | 9 |
| 315 | 122.28 | humidity | 80.0 | 90 | < th | dose independent | rect. | 22 | 10 |
| 330 | 122.32 | humidity | 70.0 | 90 | < th | dose independent | rect. | 18 | 14 |
| 384 | 122.56 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 12 |
| 388 | 122.58 | wind | 9.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 402 | 122.65 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 19 | 3 |
| 405 | 122.65 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 19 | 3 |
| 411 | 122.68 | wind | 9.0 | 270 | > th | dose independent | sin | 3 | NA |
| 428 | 122.72 | wind | 7.0 | 30 | > th | dose dependent | rect. | 19 | 10 |
| 434 | 122.73 | wind | 7.0 | 30 | > th | dose dependent | rect. | 19 | 3 |
| 492 | 122.93 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 510 | 122.94 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 4 |
| 589 | 122.95 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 593 | 122.96 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 594 | 122.96 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 597 | 122.96 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 684 | 122.96 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 778 | 122.97 | wind | 9.0 | 90 | > th | dose dependent | sin | 21 | NA |
| 779 | 122.97 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 930 | 123.11 | radiation | 10.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 970 | 123.23 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |