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Os06g0660800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.83 (0.0298) R2 : 0.759
β1 : -1.22 (0.109) R2dD : 0.0652 R2D : 0.0566
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.98 (0.0827) R2dE : 0.677 R2E : 0.685
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.34 (0.0637) R2dN8 : 0.0209 R2N8 : 0.00943
σ : 0.558
deviance : 143.42
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C
peak time of C : --
E
wheather : temperature
threshold : 3.134
memory length : 374
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.38
open length of G : 9.57

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.9 0.523 9.89 -1.3 1.34 -1.95 -2.1 -1.18 -0.418 23.3 14.81 245 8.17 6.95
124.29 0.519 9.89 -1.23 1.37 -1.91 -1.63 -- -0.415 23.4 16.07 204 8.34 7.27
132.58 0.536 9.87 -1.1 1.47 -1.81 -- 1.56 -0.395 23.7 16.71 200 8.4 7.22
134.61 0.54 9.88 -1.2 1.53 -1.63 -- -- -0.403 23.9 16.7 192 8.38 7.28
138.55 0.548 9.84 -1.12 -- -3.21 -- 1.42 -0.331 -- 5.105 366 4.27 9.73
160.41 0.594 9.9 -1.4 2.47 -- -0.95 -- -0.463 0.606 -- -- -- --
164.22 0.6 9.9 -1.37 2.47 -- -- -- -0.459 0.65 -- -- -- --
143.42 0.558 9.83 -1.22 -- -2.98 -- -- -0.34 -- 3.134 374 4.38 9.57
172.1 0.611 9.85 -- 1.58 -1.68 -- -- -0.291 23.7 17.55 189 8.38 7.48
545.95 1.09 9.86 -1.28 -- -- -- -- -0.415 -- -- -- -- --
213.6 0.684 9.87 -- 2.45 -- -- -- -0.306 0.623 -- -- -- --
179.92 0.625 9.81 -- -- -3.11 -- -- -0.237 -- 7.058 380 4.25 9.72
589.24 1.13 9.82 -- -- -- -- -- -0.273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.57 temperature 15.0 270 > th dose dependent rect. 8 7
17 128.82 temperature 25.0 270 > th dose independent rect. 9 5
35 131.12 temperature 20.0 10 > th dose dependent rect. 10 6
50 132.08 temperature 10.0 10 > th dose dependent sin 23 NA
67 132.95 wind 5.0 270 < th dose independent rect. 9 6
73 133.24 wind 9.0 270 < th dose dependent rect. 9 6
82 133.38 temperature 10.0 270 > th dose dependent rect. 1 13
101 133.88 temperature 25.0 10 > th dose independent rect. 10 8
105 134.00 temperature 10.0 270 > th dose dependent rect. 3 11
108 134.07 temperature 10.0 270 > th dose dependent rect. 20 18
126 134.48 wind 7.0 270 < th dose independent rect. 19 20
168 135.11 temperature 25.0 10 > th dose independent rect. 10 6
195 135.61 wind 7.0 270 < th dose independent rect. 21 17
208 135.72 radiation 20.0 10 < th dose dependent sin 18 NA
214 135.88 wind 7.0 270 < th dose independent rect. 9 14
255 136.33 temperature 25.0 90 > th dose dependent rect. 20 20
271 136.52 temperature 30.0 270 < th dose dependent rect. 2 16
280 136.58 temperature 30.0 10 < th dose dependent rect. 6 14
284 136.63 temperature 25.0 270 > th dose independent rect. 4 11
297 136.70 wind 9.0 270 < th dose dependent rect. 10 13
299 136.74 temperature 25.0 270 < th dose independent rect. 2 16
306 136.75 temperature 10.0 10 > th dose dependent rect. 1 15
379 137.32 temperature 15.0 270 > th dose independent rect. 20 18
440 137.74 temperature 10.0 10 > th dose dependent rect. 20 20
459 137.85 wind 1.0 270 > th dose dependent rect. 15 4
481 138.01 radiation 40.0 270 < th dose independent rect. 23 11
505 138.17 radiation 1.0 270 > th dose independent rect. 9 6
511 138.20 radiation 1.0 10 < th dose dependent rect. 11 9
519 138.23 temperature 30.0 90 < th dose independent rect. 6 14
523 138.26 radiation 1.0 10 < th dose dependent rect. 13 7
540 138.33 radiation 30.0 270 < th dose independent rect. 15 18
551 138.38 precipitation 0.1 270 < th dose independent rect. 15 18
552 138.38 precipitation 0.1 270 < th dose dependent rect. 15 18
570 138.48 wind 9.0 270 < th dose dependent rect. 19 20
591 138.57 wind 7.0 10 < th dose independent rect. 20 22
598 138.60 radiation 40.0 270 < th dose independent rect. 1 9
603 138.63 radiation 1.0 10 < th dose dependent rect. 15 5
608 138.64 wind 9.0 270 < th dose dependent rect. 20 18
624 138.71 radiation 1.0 30 < th dose independent rect. 11 9
639 138.75 temperature 10.0 270 > th dose dependent rect. 9 15
640 138.76 temperature 25.0 10 > th dose dependent rect. 20 22
641 138.77 radiation 1.0 30 < th dose independent rect. 13 7
652 138.81 temperature 15.0 10 > th dose dependent rect. 10 16
664 138.86 temperature 30.0 90 < th dose dependent sin 1 NA
667 138.88 temperature 15.0 270 > th dose independent rect. 9 6
677 138.92 wind 1.0 270 > th dose dependent rect. 5 14
682 138.94 radiation 1.0 90 < th dose independent rect. 15 4
688 138.95 wind 1.0 270 > th dose independent rect. 15 4
702 138.99 wind 7.0 10 < th dose independent rect. 20 20
729 139.09 radiation 20.0 10 < th dose independent sin 16 NA
732 139.10 atmosphere 1015.0 270 < th dose independent rect. 14 7
747 139.15 temperature 10.0 270 > th dose independent rect. 15 4
749 139.15 atmosphere 1010.0 270 < th dose independent rect. 15 4
754 139.16 temperature 10.0 10 > th dose dependent rect. 23 17
766 139.21 humidity 90.0 270 < th dose independent rect. 9 6
770 139.22 temperature 25.0 270 < th dose independent sin 4 NA
773 139.23 precipitation 0.1 270 < th dose independent rect. 15 4
774 139.23 precipitation 0.1 270 < th dose dependent rect. 15 4
785 139.26 wind 1.0 270 > th dose independent rect. 14 6
786 139.26 atmosphere 995.0 270 > th dose independent rect. 19 20
792 139.28 temperature 30.0 10 < th dose dependent rect. 4 16
795 139.30 humidity 50.0 270 > th dose independent rect. 19 20
800 139.31 radiation 40.0 270 < th dose independent rect. 14 20
804 139.34 radiation 40.0 270 < th dose independent rect. 15 4
812 139.36 temperature 15.0 10 > th dose dependent rect. 10 14
821 139.40 radiation 40.0 90 < th dose independent rect. 17 18
833 139.44 precipitation 0.1 270 < th dose independent rect. 14 6
835 139.44 precipitation 0.1 270 < th dose dependent rect. 14 6
866 139.56 radiation 1.0 30 < th dose independent sin 20 NA
871 139.58 temperature 30.0 270 < th dose independent rect. 1 9
874 139.59 temperature 10.0 270 > th dose independent rect. 14 6
878 139.59 atmosphere 995.0 270 > th dose independent rect. 20 18
879 139.59 temperature 25.0 270 > th dose dependent sin 5 NA
883 139.60 humidity 50.0 270 > th dose independent rect. 15 4
902 139.66 precipitation 0.1 270 < th dose independent rect. 19 20
906 139.66 precipitation 0.1 270 < th dose dependent rect. 19 20
914 139.69 temperature 30.0 270 < th dose independent rect. 23 11
915 139.69 humidity 50.0 270 > th dose independent rect. 20 18
918 139.69 temperature 25.0 10 > th dose dependent rect. 10 13
973 139.85 radiation 1.0 90 < th dose independent rect. 17 2
974 139.85 precipitation 0.1 270 < th dose independent rect. 20 18
977 139.85 precipitation 0.1 270 < th dose dependent rect. 20 18
978 139.86 radiation 40.0 90 < th dose dependent rect. 15 5