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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0660600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0476) R2 : 0.0174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.285 (0.1) R2dN8 : 0.0225 R2N8 : 0.0174
σ : 0.896
deviance : 368.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
345.65 0.874 3.34 0.0871 0.0443 1.66 1.31 -1.82 -0.171 3.83 0.2198 1588 -- --
346.13 0.867 3.31 0.128 0.0461 1.2 1.33 -- -0.186 4.03 0.4995 1587 -- --
350.61 0.872 3.34 0.0994 0.0882 1.53 -- -1.48 -0.171 5.56 0.4379 1587 -- --
350.87 0.872 3.32 0.113 0.0757 1.15 -- -- -0.191 6.52 0.3153 1587 -- --
350.86 0.872 3.34 0.0799 -- 1.57 -- -1.57 -0.179 -- 0.435 1587 -- --
360.2 0.89 3.33 0.394 0.034 -- 1.25 -- -0.237 3.57 -- -- -- --
364.88 0.895 3.33 0.374 0.0582 -- -- -- -0.245 6.28 -- -- -- --
349.77 0.871 3.32 0.0546 -- 1.07 -- -- -0.176 -- 0.5 2219 -- --
351.19 0.873 3.32 -- 0.0794 1.2 -- -- -0.197 6.49 0.4197 1587 -- --
365.06 0.893 3.33 0.375 -- -- -- -- -0.243 -- -- -- -- --
368.56 0.898 3.34 -- 0.0636 -- -- -- -0.286 5.97 -- -- -- --
349.84 0.871 3.32 -- -- 1.09 -- -- -0.18 -- 0.4914 2219 -- --
368.77 0.896 3.34 -- -- -- -- -- -0.285 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.91 humidity 80.0 10 > th dose independent rect. 10 1
3 333.10 humidity 80.0 10 > th dose dependent rect. 10 1
5 333.97 atmosphere 1005.0 90 < th dose dependent rect. 8 1
9 336.64 humidity 80.0 10 > th dose independent rect. 8 3
37 342.87 wind 7.0 43200 < th dose dependent rect. 24 1
43 343.61 wind 3.0 43200 < th dose independent rect. 18 13
44 343.72 wind 3.0 43200 > th dose independent rect. 18 13
47 343.80 wind 3.0 43200 > th dose independent rect. 16 17
48 343.85 wind 3.0 43200 < th dose independent sin 12 NA
51 343.88 wind 3.0 43200 > th dose independent sin 12 NA
53 343.89 wind 3.0 43200 < th dose independent rect. 16 17
81 344.22 precipitation 0.1 1440 > th dose independent rect. 19 8
92 344.36 wind 3.0 43200 < th dose independent rect. 24 3
113 344.48 precipitation 0.1 1440 < th dose independent rect. 18 1
116 344.48 wind 3.0 43200 < th dose independent rect. 20 21
117 344.48 precipitation 0.1 1440 < th dose dependent rect. 18 1
120 344.49 wind 5.0 43200 < th dose dependent sin 12 NA
128 344.51 wind 3.0 43200 > th dose independent rect. 20 21
130 344.52 wind 5.0 43200 < th dose dependent rect. 17 14
135 344.54 wind 3.0 43200 < th dose independent rect. 23 18
139 344.54 humidity 90.0 1440 > th dose dependent rect. 18 3
142 344.55 wind 1.0 43200 > th dose dependent rect. 24 1
143 344.56 wind 3.0 43200 > th dose independent rect. 23 18
170 344.63 wind 5.0 43200 < th dose dependent rect. 18 11
185 344.68 wind 5.0 43200 < th dose dependent rect. 19 9
199 344.71 wind 5.0 43200 < th dose dependent rect. 16 17
206 344.75 humidity 80.0 43200 > th dose independent rect. 3 1
209 344.75 wind 5.0 43200 < th dose dependent rect. 15 19
225 344.79 humidity 80.0 43200 < th dose independent rect. 3 1
230 344.80 wind 3.0 43200 > th dose independent rect. 6 1
234 344.80 wind 1.0 43200 > th dose dependent rect. 16 15
251 344.86 wind 3.0 43200 > th dose independent rect. 24 23
253 344.86 wind 5.0 43200 < th dose dependent rect. 15 22
254 344.87 precipitation 0.1 1440 < th dose independent rect. 18 9
257 344.87 precipitation 0.1 1440 < th dose dependent rect. 18 9
262 344.89 humidity 80.0 43200 > th dose independent rect. 24 1
265 344.90 wind 3.0 43200 > th dose independent no NA NA
278 344.93 wind 1.0 43200 > th dose dependent rect. 15 18
296 344.96 humidity 80.0 43200 > th dose independent rect. 24 7
299 344.96 wind 3.0 43200 < th dose independent rect. 24 23
311 344.99 wind 3.0 43200 < th dose independent no NA NA
331 345.01 wind 5.0 43200 < th dose dependent rect. 19 22
332 345.02 wind 3.0 43200 < th dose independent rect. 6 1
333 345.02 humidity 80.0 43200 < th dose independent rect. 23 5
334 345.02 humidity 80.0 43200 > th dose independent rect. 23 9
341 345.03 wind 3.0 43200 > th dose independent rect. 3 23
345 345.04 wind 1.0 1440 > th dose independent rect. 17 2
371 345.06 wind 1.0 43200 > th dose dependent sin 12 NA
376 345.07 wind 3.0 43200 < th dose independent sin 3 NA
385 345.07 humidity 80.0 43200 < th dose dependent rect. 2 1
388 345.08 humidity 80.0 43200 < th dose independent rect. 24 1
398 345.09 wind 3.0 43200 > th dose independent rect. 8 23
408 345.10 wind 5.0 43200 < th dose dependent rect. 23 18
441 345.14 wind 3.0 43200 < th dose independent rect. 2 23
443 345.14 wind 3.0 43200 < th dose dependent rect. 23 5
444 345.14 humidity 90.0 1440 > th dose dependent rect. 5 17
469 345.18 wind 3.0 43200 > th dose independent sin 3 NA
472 345.18 wind 3.0 43200 > th dose independent rect. 6 23
473 345.18 wind 3.0 43200 < th dose independent rect. 8 23
479 345.18 wind 7.0 43200 < th dose dependent rect. 11 22
491 345.19 wind 1.0 43200 > th dose dependent rect. 11 22
510 345.21 wind 1.0 43200 > th dose dependent rect. 23 21
511 345.21 wind 9.0 43200 < th dose dependent rect. 23 21
518 345.22 precipitation 0.1 1440 > th dose dependent rect. 19 8
566 345.27 wind 1.0 43200 > th dose dependent rect. 15 22
571 345.28 wind 3.0 43200 < th dose independent rect. 6 23
590 345.29 wind 5.0 43200 < th dose dependent no NA NA
619 345.32 wind 1.0 270 > th dose dependent rect. 2 1
665 345.36 wind 1.0 1440 < th dose independent rect. 18 1
709 345.38 wind 9.0 43200 < th dose dependent rect. 4 23
717 345.39 humidity 90.0 43200 < th dose dependent rect. 4 1
729 345.40 wind 1.0 43200 > th dose dependent no NA NA
733 345.40 wind 1.0 43200 > th dose dependent rect. 4 23
743 345.41 wind 3.0 43200 < th dose dependent sin 9 NA
774 345.43 wind 1.0 43200 > th dose dependent rect. 18 23
802 345.46 wind 3.0 14400 < th dose independent rect. 21 1
812 345.47 humidity 80.0 43200 < th dose independent rect. 22 11
848 345.49 precipitation 0.1 14400 < th dose independent rect. 16 7
852 345.49 precipitation 0.1 14400 < th dose dependent rect. 16 7
863 345.50 precipitation 0.1 14400 > th dose independent rect. 16 7