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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0659800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0412) R2 : 0.496
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.65 (0.108) R2dC : 0.277 R2C : 0.37
β3 : -1.73 (0.168) R2dE : 0.126 R2E : 0.218
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0799 (0.087) R2dN8 : 0.00121 R2N8 : -0.00213
σ : 0.773
deviance : 275.56
__
_____
C
peak time of C : 3.72
E
wheather : humidity
threshold : 56
memory length : 1254
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.48 0.771 4.7 -0.432 1.63 -1.82 0.941 0.454 -0.11 4.01 53 1189 -- --
269.74 0.765 4.7 -0.38 1.63 -1.78 0.895 -- -0.105 3.98 54 1197 -- --
271.68 0.768 4.7 -0.402 1.64 -1.77 -- 0.122 -0.114 3.84 54 1221 -- --
271.7 0.768 4.7 -0.392 1.65 -1.74 -- -- -0.115 3.78 54 1236 -- --
408.22 0.941 4.71 -0.392 -- -2.46 -- 0.505 -0.0998 -- 54 1183 -- --
332.83 0.855 4.68 -0.29 1.93 -- 0.871 -- -0.0266 3.38 -- -- -- --
335.21 0.857 4.69 -0.306 1.93 -- -- -- -0.0316 3.36 -- -- -- --
408.5 0.941 4.71 -0.358 -- -2.45 -- -- -0.103 -- 54.77 1184 -- --
275.56 0.773 4.69 -- 1.65 -1.73 -- -- -0.0799 3.72 56 1254 -- --
544.95 1.09 4.69 -0.225 -- -- -- -- 0.0194 -- -- -- -- --
337.69 0.86 4.68 -- 1.92 -- -- -- 0.00255 3.36 -- -- -- --
411.78 0.945 4.71 -- -- -2.44 -- -- -0.0756 -- 56.23 1187 -- --
546.28 1.09 4.68 -- -- -- -- -- 0.0443 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 267.13 humidity 60 720 > th dose dependent rect. 15 11
6 268.59 humidity 90 720 < th dose dependent rect. 17 7
11 269.35 humidity 80 1440 > th dose independent rect. 3 14
14 269.41 humidity 80 1440 > th dose independent sin 1 NA
21 269.60 humidity 80 1440 > th dose independent rect. 2 18
27 269.74 humidity 80 1440 > th dose independent rect. 7 10
33 269.99 humidity 90 720 < th dose dependent rect. 17 11
41 270.14 humidity 50 720 > th dose dependent rect. 15 18
48 270.24 humidity 80 1440 < th dose independent rect. 2 15
50 270.27 humidity 80 1440 < th dose independent sin 1 NA
70 270.50 humidity 80 1440 < th dose independent rect. 7 10
91 270.80 humidity 80 1440 < th dose independent rect. 2 18
118 271.22 humidity 80 1440 < th dose independent rect. 7 13
169 271.79 humidity 60 1440 > th dose dependent rect. 11 11
176 271.85 humidity 60 720 > th dose dependent sin 14 NA
199 272.12 humidity 60 1440 > th dose dependent rect. 12 2
222 272.57 humidity 60 1440 > th dose dependent sin 21 NA
224 272.58 humidity 60 1440 > th dose dependent rect. 11 4
263 273.12 humidity 60 1440 > th dose dependent rect. 3 19
264 273.13 humidity 60 1440 > th dose dependent rect. 11 6
266 273.14 radiation 10 1440 < th dose dependent sin 20 NA
313 273.55 humidity 90 720 < th dose dependent sin 13 NA
335 273.77 radiation 10 1440 < th dose dependent rect. 9 19
347 273.84 radiation 10 1440 < th dose dependent rect. 9 12
350 273.85 radiation 10 1440 < th dose dependent rect. 9 16
379 273.96 humidity 50 1440 > th dose dependent rect. 11 18
395 274.08 radiation 1 1440 < th dose independent rect. 18 23
400 274.08 humidity 90 1440 < th dose dependent rect. 11 22
405 274.13 radiation 1 1440 > th dose independent rect. 18 23
417 274.16 humidity 90 1440 < th dose dependent rect. 3 19
452 274.32 humidity 90 1440 < th dose dependent rect. 11 11
569 274.76 radiation 10 1440 < th dose dependent rect. 12 16
574 274.79 humidity 80 720 > th dose dependent rect. 19 4
589 274.84 radiation 10 1440 < th dose dependent rect. 12 9
595 274.86 radiation 10 1440 < th dose dependent rect. 12 13
603 274.88 radiation 10 1440 < th dose dependent rect. 12 18
607 274.89 humidity 90 1440 < th dose dependent sin 21 NA
624 274.96 humidity 80 720 < th dose independent rect. 17 4
641 275.03 humidity 80 1440 > th dose independent rect. 11 23
689 275.18 humidity 90 1440 < th dose dependent rect. 8 14
727 275.31 radiation 1 1440 < th dose independent rect. 11 20
746 275.36 humidity 90 1440 < th dose dependent rect. 18 23
796 275.47 humidity 50 1440 > th dose dependent rect. 18 23
828 275.57 humidity 80 1440 > th dose independent rect. 7 20
840 275.59 radiation 1 1440 < th dose independent sin 23 NA
855 275.62 humidity 90 1440 < th dose dependent rect. 12 5
860 275.63 humidity 50 1440 > th dose dependent no NA NA
875 275.66 humidity 90 1440 < th dose dependent no NA NA
906 275.71 humidity 80 1440 > th dose independent rect. 18 23
919 275.76 radiation 1 1440 > th dose independent rect. 11 20
967 275.89 radiation 10 1440 > th dose independent rect. 8 23
980 275.91 radiation 1 1440 > th dose independent sin 23 NA
990 275.92 humidity 90 1440 < th dose dependent rect. 12 2
996 275.93 humidity 50 1440 > th dose dependent rect. 20 23
997 275.93 humidity 90 1440 < th dose dependent rect. 20 23