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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0659400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0397) R2 : 0.521
β1 : 1.42 (0.143) R2dD : 0.109 R2D : 0.0339
β2 : 1.66 (0.108) R2dC : 0.286 R2C : 0.193
β3 : -0.509 (0.0805) R2dE : 0.0581 R2E : 0.0055
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.811 (0.0927) R2dN8 : 0.136 R2N8 : 0.136
σ : 0.728
deviance : 241.19
__
_____
C
peak time of C : 5.61
E
wheather : temperature
threshold : 25
memory length : 3
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.9 0.714 5.46 0.988 1.64 -0.522 0.793 1.43 0.701 5.62 24.8 10 -- --
237.11 0.723 5.42 1.41 1.66 -0.536 1.3 -- 0.802 5.51 25 3 -- --
232.27 0.71 5.46 0.96 1.64 -0.517 -- 1.56 0.691 5.63 24.8 8 -- --
241.19 0.728 5.42 1.42 1.66 -0.509 -- -- 0.811 5.61 25 3 -- --
355.87 0.879 5.43 1.04 -- -0.0746 -- 1.65 0.918 -- 24.7 5 -- --
257.35 0.752 5.36 1.52 1.45 -- 0.94 -- 1.08 6.14 -- -- -- --
259.46 0.754 5.36 1.53 1.45 -- -- -- 1.08 6.22 -- -- -- --
359.23 0.883 5.36 1.64 -- 0.312 -- -- 1.22 -- 27 6 -- --
293.26 0.798 5.47 -- 1.74 -0.632 -- -- 0.591 5.44 24.99 3 -- --
369.01 0.898 5.39 1.57 -- -- -- -- 1.11 -- -- -- -- --
321.17 0.838 5.4 -- 1.48 -- -- -- 0.908 6.17 -- -- -- --
421.79 0.957 5.46 -- -- -0.38 -- -- 0.786 -- 23.89 3 -- --
434.03 0.972 5.43 -- -- -- -- -- 0.936 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.86 temperature 10.0 10 > th dose dependent rect. 4 21
4 220.15 wind 9.0 90 < th dose dependent rect. 4 20
9 220.84 atmosphere 995.0 10 > th dose dependent rect. 1 3
13 221.44 atmosphere 995.0 10 > th dose independent rect. 4 21
14 221.68 wind 9.0 10 < th dose independent rect. 4 21
15 221.73 temperature 25.0 10 < th dose independent rect. 24 4
20 221.91 temperature 25.0 10 < th dose independent rect. 7 22
23 222.09 wind 9.0 4320 < th dose independent rect. 2 3
24 222.10 precipitation 0.1 10 < th dose independent rect. 4 21
25 222.10 precipitation 0.1 10 < th dose dependent rect. 4 21
27 222.20 wind 3.0 90 < th dose independent rect. 4 19
29 222.49 atmosphere 1000.0 10 > th dose independent rect. 1 3
30 222.65 precipitation 0.1 10 < th dose independent rect. 1 3
32 222.65 precipitation 0.1 10 < th dose dependent rect. 1 3
33 222.71 wind 9.0 10 < th dose independent rect. 1 3
34 222.71 temperature 10.0 10 > th dose independent rect. 1 3
37 222.71 humidity 50.0 10 > th dose independent rect. 1 3
41 222.71 atmosphere 1010.0 10 < th dose independent rect. 1 3
43 222.71 radiation 1.0 10 < th dose independent rect. 1 3
48 222.71 temperature 10.0 10 > th dose independent rect. 4 21
49 222.71 radiation 1.0 10 < th dose dependent rect. 1 3
55 222.90 temperature 25.0 10 > th dose independent rect. 17 17
62 223.13 temperature 10.0 1440 > th dose independent rect. 2 3
65 223.13 temperature 30.0 1440 < th dose independent rect. 2 3
69 223.13 humidity 50.0 1440 > th dose independent rect. 2 3
78 223.13 atmosphere 995.0 1440 > th dose independent rect. 2 3
79 223.13 radiation 20.0 1440 < th dose independent rect. 2 3
91 223.13 temperature 10.0 1440 > th dose independent rect. 5 21
121 223.48 temperature 10.0 10 > th dose dependent rect. 1 3
134 224.23 temperature 25.0 10 < th dose independent sin 7 NA
135 224.29 temperature 25.0 10 > th dose independent sin 8 NA
151 224.73 humidity 50.0 10 > th dose dependent rect. 1 3
159 224.85 wind 9.0 10 < th dose dependent rect. 1 3
191 225.16 radiation 20.0 90 < th dose independent rect. 4 6
200 225.33 atmosphere 1015.0 10 < th dose independent rect. 4 21
305 225.99 atmosphere 1010.0 270 < th dose independent rect. 23 2
339 226.28 temperature 30.0 10 < th dose dependent rect. 24 4
342 226.32 wind 3.0 10 < th dose independent rect. 1 3
399 226.97 wind 3.0 30 < th dose independent rect. 4 6
403 227.05 wind 1.0 90 > th dose independent rect. 1 2
406 227.11 wind 3.0 30 < th dose independent rect. 4 9
413 227.24 humidity 50.0 30 > th dose independent rect. 4 21
418 227.31 wind 7.0 90 < th dose dependent rect. 4 11
425 227.42 wind 3.0 90 < th dose independent rect. 4 11
428 227.44 atmosphere 1015.0 270 < th dose dependent rect. 23 2
478 227.78 temperature 10.0 720 > th dose dependent rect. 4 1
497 228.04 radiation 30.0 90 < th dose dependent rect. 4 6
514 228.18 wind 1.0 30 > th dose independent rect. 4 21
522 228.28 wind 9.0 4320 < th dose independent rect. 5 3
523 228.28 temperature 25.0 10 < th dose independent rect. 18 20
549 228.36 wind 7.0 90 < th dose dependent rect. 4 15
564 228.49 atmosphere 1015.0 90 < th dose dependent rect. 1 2
572 228.61 atmosphere 1015.0 10 < th dose dependent rect. 24 4
573 228.62 temperature 25.0 10 < th dose independent rect. 18 18
577 228.66 wind 3.0 30 < th dose independent rect. 4 3
585 228.69 humidity 70.0 30 > th dose independent rect. 4 6
638 229.03 wind 1.0 90 > th dose independent rect. 24 4
639 229.04 wind 5.0 30 < th dose dependent rect. 4 6
677 229.28 humidity 50.0 270 > th dose dependent rect. 23 2
681 229.29 atmosphere 1015.0 90 < th dose dependent rect. 23 5
683 229.32 temperature 25.0 10 > th dose independent rect. 17 23
710 229.43 humidity 60.0 90 > th dose dependent rect. 4 6
712 229.46 radiation 40.0 10 < th dose dependent rect. 4 6
719 229.53 temperature 25.0 10 < th dose independent rect. 22 23
730 229.67 temperature 25.0 10 < th dose independent rect. 16 22
735 229.73 temperature 10.0 1440 > th dose independent rect. 5 3
738 229.73 temperature 30.0 1440 < th dose independent rect. 5 3
742 229.73 humidity 50.0 1440 > th dose independent rect. 5 3
747 229.73 atmosphere 995.0 1440 > th dose independent rect. 5 3
748 229.73 atmosphere 1015.0 1440 < th dose independent rect. 5 3
749 229.73 temperature 10.0 1440 > th dose independent rect. 8 21
752 229.74 temperature 25.0 10 < th dose independent rect. 24 12
791 230.03 temperature 25.0 10 > th dose independent rect. 17 20
793 230.06 wind 5.0 30 < th dose dependent rect. 4 3
854 230.31 temperature 25.0 10 < th dose independent rect. 10 19
901 230.55 radiation 10.0 90 < th dose independent rect. 4 20
905 230.57 wind 5.0 10 < th dose independent rect. 4 13
926 230.67 temperature 25.0 10 < th dose independent rect. 22 14
968 230.94 radiation 20.0 90 < th dose dependent rect. 4 20
969 230.95 radiation 10.0 270 < th dose independent rect. 17 14
984 231.08 temperature 30.0 30 < th dose dependent rect. 7 21