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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0654500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0425) R2 : 0.0739
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.93 (0.326) R2dE : 0.0716 R2E : 0.0643
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.171 (0.0899) R2dN8 : 0.00961 R2N8 : 0.00227
σ : 0.797
deviance : 292.76
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 996.6
memory length : 2289
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.77 0.786 2.45 4.77 0.194 42.5 -0.092 -259 0.09 10.6 995 1442 -- --
306.9 0.822 3.34 -0.412 0.235 0.419 0.295 -- 0.0624 8.54 995 1442 -- --
284.8 0.786 2.45 4.76 0.196 42.5 -- -259 0.0894 10.3 995 1438 -- --
288.41 0.791 3.4 -0.423 0.242 -1.46 -- -- 0.00922 8.27 996.8 2182 -- --
287.13 0.789 2.46 4.78 -- 42.7 -- -260 0.0872 -- 995 1462 -- --
307.24 0.822 3.34 -0.418 0.238 -- 0.361 -- 0.064 8.29 -- -- -- --
307.46 0.821 3.34 -0.405 0.239 -- -- -- 0.0653 9.19 -- -- -- --
287.41 0.79 3.33 -0.453 -- -1.99 -- -- 0.122 -- 996.7 2257 -- --
290.36 0.794 3.31 -- 0.209 -1.86 -- -- 0.176 8.15 996.6 2289 -- --
310.77 0.824 3.34 -0.406 -- -- -- -- 0.0665 -- -- -- -- --
311.79 0.826 3.33 -- 0.239 -- -- -- 0.11 9.31 -- -- -- --
292.76 0.797 3.32 -- -- -1.93 -- -- 0.171 -- 996.6 2289 -- --
315.12 0.829 3.33 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 271.43 atmosphere 1000 270 < th dose dependent rect. 5 3
2 272.03 atmosphere 1000 270 < th dose dependent rect. 7 1
4 273.04 atmosphere 1000 270 < th dose dependent rect. 4 5
11 274.44 atmosphere 1000 10 < th dose dependent rect. 6 4
41 278.23 atmosphere 1000 270 > th dose independent rect. 23 9
45 278.45 atmosphere 1000 720 < th dose dependent rect. 22 10
50 278.73 atmosphere 1000 270 < th dose independent rect. 3 5
59 279.05 atmosphere 1000 90 < th dose independent rect. 7 2
63 279.18 atmosphere 1000 720 < th dose dependent rect. 23 6
68 279.30 radiation 30 270 > th dose independent rect. 7 1
88 279.44 atmosphere 1000 720 < th dose dependent rect. 24 3
97 279.70 atmosphere 995 1440 > th dose independent rect. 12 13
107 279.99 atmosphere 1005 10 < th dose dependent rect. 2 8
110 280.08 atmosphere 1000 10 < th dose dependent rect. 4 7
128 280.36 atmosphere 1000 10 > th dose independent rect. 24 11
141 280.56 temperature 30 90 > th dose dependent rect. 10 1
144 280.64 atmosphere 1000 10 < th dose independent rect. 6 4
167 281.11 atmosphere 995 270 > th dose dependent rect. 23 9
219 281.84 atmosphere 995 1440 > th dose independent rect. 7 18
227 281.96 atmosphere 995 1440 > th dose independent rect. 16 22
247 282.23 atmosphere 995 1440 > th dose independent rect. 7 20
279 282.67 atmosphere 995 1440 > th dose independent rect. 7 22
343 283.52 atmosphere 1000 720 < th dose dependent sin 9 NA
371 283.82 atmosphere 995 1440 > th dose independent sin 3 NA
372 283.84 atmosphere 995 1440 > th dose independent sin 17 NA
382 283.94 atmosphere 995 10 > th dose dependent rect. 24 11
391 283.99 atmosphere 995 1440 > th dose independent rect. 7 9
410 284.14 atmosphere 1000 10 < th dose independent rect. 2 9
414 284.15 atmosphere 995 1440 > th dose independent rect. 2 23
421 284.20 atmosphere 995 1440 > th dose independent rect. 4 23
426 284.24 atmosphere 995 1440 > th dose independent rect. 10 23
427 284.24 atmosphere 995 1440 > th dose independent rect. 22 23
433 284.27 atmosphere 1000 10 < th dose independent rect. 4 6
435 284.28 atmosphere 1000 270 < th dose dependent sin 7 NA
446 284.34 atmosphere 995 1440 > th dose independent rect. 4 21
447 284.34 atmosphere 995 1440 > th dose independent rect. 12 21
466 284.52 atmosphere 995 1440 > th dose independent rect. 18 23
474 284.58 atmosphere 1000 10 > th dose independent rect. 2 9
482 284.62 atmosphere 995 1440 > th dose independent rect. 12 9
492 284.70 atmosphere 995 1440 < th dose independent rect. 14 1
533 284.70 atmosphere 995 1440 < th dose dependent rect. 14 1
576 284.72 atmosphere 995 1440 < th dose independent sin 6 NA
581 284.73 atmosphere 995 1440 < th dose dependent sin 6 NA
611 284.75 atmosphere 995 1440 < th dose dependent sin 4 NA
614 284.76 atmosphere 995 1440 < th dose independent sin 1 NA
637 284.76 atmosphere 995 1440 < th dose dependent sin 2 NA
661 284.77 atmosphere 995 1440 > th dose independent no NA NA
662 284.77 atmosphere 995 1440 < th dose independent sin 21 NA
669 284.77 atmosphere 995 1440 < th dose dependent sin 21 NA
695 284.78 atmosphere 995 1440 < th dose independent sin 16 NA
700 284.78 atmosphere 995 1440 < th dose independent no NA NA
892 284.78 atmosphere 995 1440 < th dose dependent sin 15 NA
898 284.78 atmosphere 995 1440 < th dose dependent no NA NA