Os06g0653900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein transport protein SEC61 gamma subunit.
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Os06g0653900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein transport protein SEC61 gamma subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.96 | 0.552 | 6.05 | 0.621 | 0.442 | 1.94 | -1.27 | 2.55 | -0.165 | 4.91 | 26.11 | 231 | -- | -- |
| 143.39 | 0.558 | 5.99 | 1.06 | 0.387 | 1.84 | -0.425 | -- | -0.0573 | 6.19 | 27.68 | 165 | -- | -- |
| 141.37 | 0.554 | 6.03 | 0.68 | 0.444 | 1.91 | -- | 2.09 | -0.13 | 5.13 | 26.22 | 229 | -- | -- |
| 143.82 | 0.559 | 5.99 | 1.07 | 0.385 | 1.86 | -- | -- | -0.0497 | 6.74 | 27.76 | 151 | -- | -- |
| 146.14 | 0.563 | 6.02 | 0.791 | -- | 2.13 | -- | 1.95 | -0.0802 | -- | 27.8 | 201 | -- | -- |
| 191.72 | 0.649 | 6.08 | 0.59 | 0.832 | -- | -0.462 | -- | -0.456 | 4.73 | -- | -- | -- | -- |
| 192.28 | 0.649 | 6.08 | 0.592 | 0.829 | -- | -- | -- | -0.454 | 4.74 | -- | -- | -- | -- |
| 149.82 | 0.57 | 5.99 | 1.13 | -- | 2.05 | -- | -- | -0.0101 | -- | 28.25 | 187 | -- | -- |
| 170.77 | 0.609 | 6.03 | -- | 0.501 | 1.42 | -- | -- | -0.256 | 6.12 | 27.92 | 105 | -- | -- |
| 228.7 | 0.707 | 6.08 | 0.624 | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
| 201.52 | 0.664 | 6.09 | -- | 0.84 | -- | -- | -- | -0.52 | 4.72 | -- | -- | -- | -- |
| 180.42 | 0.626 | 6.03 | -- | -- | 1.69 | -- | -- | -0.214 | -- | 28.9 | 173 | -- | -- |
| 238.95 | 0.722 | 6.1 | -- | -- | -- | -- | -- | -0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.32 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 133.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 9 | 136.28 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 10 | 136.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 33 | 138.69 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 38 | 139.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 40 | 139.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 41 | 139.36 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 54 | 140.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 56 | 140.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 71 | 140.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 93 | 141.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 109 | 141.40 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 145 | 142.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 241 | 144.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 273 | 144.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 331 | 145.44 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 478 | 146.96 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 22 |
| 484 | 147.02 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 494 | 147.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 501 | 147.16 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 502 | 147.17 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 618 | 148.16 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 623 | 148.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 656 | 148.38 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 694 | 148.58 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 20 |
| 703 | 148.67 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |
| 724 | 148.83 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 23 |
| 794 | 149.30 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 808 | 149.39 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 832 | 149.56 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 850 | 149.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 869 | 149.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 895 | 149.97 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 915 | 150.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 953 | 150.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 965 | 150.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 969 | 150.50 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 972 | 150.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |