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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0653300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0515) R2 : 0.102
β1 : 1.02 (0.206) R2dD : 0.0712 R2D : -0.00155
β2 : -- (--) R2dC : -- R2C : --
β3 : -18.7 (4.29) R2dE : 1.85 R2E : -2.34
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 112 (22.5) R2dD*E : 2.39 R2D*E : -1.78
γ1 : -0.15 (0.1) R2dN8 : 0.00589 R2N8 : -0.00431
σ : 0.88
deviance : 356.73
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.7
memory length : 82
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.96 0.885 2.91 1.01 0.147 -18.5 0.489 111 -0.151 7.09 999.9 90 13 1.02
378.52 0.913 3.02 0.447 0.146 1.56 0.478 -- -0.15 7.17 999.9 90 13 1.02
355.57 0.878 2.92 1.01 0.149 -18.6 -- 111 -0.152 6.77 999.8 89 13 1.06
373.29 0.9 3.02 0.451 0.151 2.57 -- -- -0.151 6.67 999.3 68 13.1 0.71
356.73 0.88 2.92 1.02 -- -18.7 -- 112 -0.15 -- 999.7 82 13 1.08
385.64 0.921 3.02 0.473 0.134 -- 0.448 -- -0.16 8.16 -- -- -- --
386.24 0.92 3.02 0.485 0.136 -- -- -- -0.161 7.77 -- -- -- --
374.47 0.905 3.02 0.455 -- 2.54 -- -- -0.148 -- 999.1 68 13.3 1.06
378.64 0.911 3.03 -- 0.157 2.65 -- -- -0.201 6.48 998.6 75 13.3 0.925
387.24 0.92 3.02 0.487 -- -- -- -- -0.159 -- -- -- -- --
392.45 0.927 3.03 -- 0.139 -- -- -- -0.215 7.53 -- -- -- --
379.93 0.911 3.03 -- -- 2.61 -- -- -0.198 -- 999.1 68 13.3 1.06
393.49 0.926 3.04 -- -- -- -- -- -0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 354.97 atmosphere 1000 90 < th dose independent rect. 13 1
2 354.98 atmosphere 1000 10 < th dose dependent rect. 14 1
10 355.11 wind 1 10 < th dose independent rect. 13 1
12 355.11 wind 1 10 < th dose dependent rect. 13 1
32 358.93 radiation 40 10 > th dose dependent rect. 14 1
74 364.50 wind 5 90 > th dose dependent rect. 12 2
96 365.56 radiation 40 10 > th dose independent rect. 14 1
134 365.62 wind 5 90 > th dose independent rect. 13 1
135 365.93 atmosphere 1015 1440 > th dose dependent rect. 24 12
139 366.23 atmosphere 1015 1440 < th dose independent rect. 9 2
140 366.25 atmosphere 1015 1440 > th dose independent rect. 10 1
155 366.25 atmosphere 1015 1440 > th dose dependent rect. 10 1
171 366.29 atmosphere 1000 90 < th dose dependent rect. 2 12
176 366.37 atmosphere 1015 1440 < th dose independent rect. 1 10
177 366.38 atmosphere 1015 1440 < th dose independent rect. 5 6
179 366.42 atmosphere 1015 1440 > th dose independent rect. 1 10
181 366.43 atmosphere 1015 1440 < th dose independent rect. 7 5
184 366.45 atmosphere 1010 270 > th dose dependent rect. 6 1
208 366.67 atmosphere 1010 270 > th dose independent rect. 5 1
238 367.49 atmosphere 1010 90 > th dose dependent rect. 8 1
293 368.42 radiation 40 10 > th dose dependent sin 13 NA
299 368.68 atmosphere 1000 10 < th dose dependent rect. 13 7
344 368.94 atmosphere 1015 1440 > th dose dependent sin 2 NA
432 369.27 radiation 1 10 < th dose dependent rect. 5 2
463 369.68 wind 5 10 > th dose dependent rect. 12 2
479 369.97 wind 5 10 > th dose independent rect. 13 1
486 370.28 atmosphere 1000 10 < th dose dependent rect. 13 20
501 370.84 radiation 40 10 > th dose independent sin 13 NA
502 370.86 atmosphere 1005 10 < th dose independent rect. 4 2
518 371.09 atmosphere 1005 90 < th dose independent rect. 4 1
530 371.19 atmosphere 1000 90 < th dose dependent rect. 2 3
531 371.20 atmosphere 1000 90 < th dose independent rect. 2 3
554 371.59 atmosphere 1000 30 < th dose independent rect. 13 7
598 371.84 atmosphere 1000 720 < th dose dependent rect. 2 1
602 371.89 atmosphere 1015 1440 > th dose independent sin 3 NA
615 371.94 wind 3 10 > th dose independent rect. 10 1
655 372.15 radiation 1 10 < th dose independent rect. 6 2
762 372.48 atmosphere 1000 270 < th dose independent rect. 10 4
764 372.52 atmosphere 1000 90 < th dose dependent rect. 2 5
765 372.56 atmosphere 1000 10 < th dose dependent rect. 3 3
768 372.61 temperature 20 10 < th dose dependent rect. 6 1
772 372.62 temperature 25 270 > th dose independent rect. 23 5
775 372.66 atmosphere 1000 90 < th dose independent rect. 2 5
777 372.70 atmosphere 1000 10 < th dose dependent rect. 3 5
779 372.72 temperature 20 10 < th dose dependent rect. 6 3
780 372.72 temperature 25 90 > th dose dependent rect. 2 4
783 372.76 wind 3 10 < th dose independent rect. 4 9
790 372.82 temperature 25 30 > th dose independent rect. 23 5
796 372.87 temperature 25 90 > th dose dependent rect. 2 2
810 372.90 atmosphere 1000 10 < th dose dependent rect. 3 1
821 372.91 temperature 20 270 < th dose dependent rect. 6 1
831 372.96 temperature 25 30 > th dose independent rect. 23 7
878 373.08 atmosphere 1015 1440 < th dose independent sin 3 NA
922 373.28 radiation 10 4320 < th dose dependent rect. 7 9
940 373.40 radiation 40 10 < th dose independent sin 13 NA
944 373.44 radiation 10 4320 > th dose independent rect. 7 8
962 373.57 radiation 10 4320 < th dose dependent rect. 8 6
975 373.66 radiation 20 90 < th dose independent rect. 7 3