Os06g0653000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glossy1 homolog (Fragment).
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Os06g0653000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glossy1 homolog (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 389.5 | 0.927 | 3.59 | 0.0808 | 0.766 | 1.5 | -1.86 | -0.481 | 0.0888 | 7.83 | 23 | 2158 | -- | -- |
| 389.5 | 0.919 | 3.6 | -0.0357 | 0.774 | 1.53 | -1.92 | -- | 0.0853 | 7.78 | 23.1 | 2175 | -- | -- |
| 398.74 | 0.93 | 3.57 | 0.193 | 0.778 | 1.52 | -- | -0.816 | 0.154 | 7.74 | 23.1 | 2175 | -- | -- |
| 400.06 | 0.932 | 3.6 | -0.129 | 0.754 | 1.5 | -- | -- | 0.0744 | 7.89 | 23.2 | 2162 | -- | -- |
| 429.78 | 0.966 | 3.57 | 0.275 | -- | 1.59 | -- | -0.982 | 0.218 | -- | 23.21 | 2185 | -- | -- |
| 479.47 | 1.03 | 3.75 | -0.703 | 0.866 | -- | -1.73 | -- | -0.582 | 8.24 | -- | -- | -- | -- |
| 488.55 | 1.04 | 3.74 | -0.752 | 0.865 | -- | -- | -- | -0.58 | 8.47 | -- | -- | -- | -- |
| 431.43 | 0.967 | 3.62 | -0.101 | -- | 1.56 | -- | -- | 0.0983 | -- | 23.2 | 2162 | -- | -- |
| 400.5 | 0.932 | 3.6 | -- | 0.759 | 1.52 | -- | -- | 0.0809 | 7.89 | 23.18 | 2162 | -- | -- |
| 530.38 | 1.08 | 3.77 | -0.748 | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
| 503.44 | 1.05 | 3.73 | -- | 0.862 | -- | -- | -- | -0.496 | 8.53 | -- | -- | -- | -- |
| 431.68 | 0.968 | 3.61 | -- | -- | 1.58 | -- | -- | 0.119 | -- | 23.18 | 2164 | -- | -- |
| 545.12 | 1.09 | 3.75 | -- | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 375.04 | temperature | 25 | 270 | < th | dose dependent | sin | 2 | NA |
| 5 | 378.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 28 | 382.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 78 | 385.57 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 103 | 386.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 143 | 388.06 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 166 | 388.57 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 196 | 389.30 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 213 | 389.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 294 | 391.40 | temperature | 30 | 1440 | < th | dose dependent | sin | 22 | NA |
| 311 | 391.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 312 | 391.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 320 | 391.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 360 | 392.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 390 | 392.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 393 | 392.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 402 | 392.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 450 | 393.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 524 | 394.17 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 525 | 394.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 541 | 394.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 561 | 394.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 599 | 394.79 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 607 | 394.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 636 | 395.23 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 697 | 395.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 714 | 395.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 715 | 395.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 759 | 395.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 793 | 396.13 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 849 | 396.39 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 937 | 396.71 | temperature | 25 | 1440 | > th | dose independent | sin | 22 | NA |
| 938 | 396.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 949 | 396.74 | temperature | 25 | 1440 | < th | dose independent | sin | 22 | NA |
| 988 | 396.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 9 |