Os06g0652600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lustrin A.
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Os06g0652600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lustrin A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.09 | 0.426 | 2.86 | -0.0224 | 0.0782 | 0.568 | 0.255 | -0.785 | -0.0277 | 8.35 | 5.9 | 533 | -- | -- |
| 82.15 | 0.422 | 2.87 | -0.0159 | 0.0817 | 0.744 | 0.275 | -- | -0.035 | 8.38 | 6.06 | 520 | -- | -- |
| 82.28 | 0.422 | 2.86 | -0.0151 | 0.0836 | 0.579 | -- | -0.825 | -0.0277 | 8.5 | 5.717 | 532 | -- | -- |
| 82.39 | 0.423 | 2.87 | 0.00395 | 0.0824 | 0.779 | -- | -- | -0.0284 | 8.45 | 6.045 | 520 | -- | -- |
| 82.61 | 0.423 | 2.86 | -0.0251 | -- | 0.531 | -- | -1.04 | -0.0281 | -- | 6.455 | 508 | -- | -- |
| 84.99 | 0.432 | 2.88 | -0.112 | 0.0111 | -- | 0.491 | -- | -0.0587 | 7.5 | -- | -- | -- | -- |
| 85.64 | 0.433 | 2.88 | -0.0996 | 0.0197 | -- | -- | -- | -0.0591 | 11.4 | -- | -- | -- | -- |
| 82.69 | 0.424 | 2.87 | -0.00329 | -- | 0.79 | -- | -- | -0.0259 | -- | 6.598 | 508 | -- | -- |
| 82.39 | 0.423 | 2.87 | -- | 0.0824 | 0.777 | -- | -- | -0.0292 | 8.43 | 6.044 | 520 | -- | -- |
| 85.66 | 0.432 | 2.88 | -0.1 | -- | -- | -- | -- | -0.0593 | -- | -- | -- | -- | -- |
| 85.9 | 0.434 | 2.87 | -- | 0.0208 | -- | -- | -- | -0.0481 | 11.7 | -- | -- | -- | -- |
| 82.69 | 0.424 | 2.87 | -- | -- | 0.785 | -- | -- | -0.0262 | -- | 6.6 | 507 | -- | -- |
| 85.93 | 0.433 | 2.87 | -- | -- | -- | -- | -- | -0.0482 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.27 | humidity | 80.0 | 30 | < th | dose independent | rect. | 22 | 2 |
| 3 | 80.39 | humidity | 80.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 7 | 80.54 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 22 | 2 |
| 16 | 80.67 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 11 | 2 |
| 22 | 80.81 | humidity | 80.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 38 | 81.12 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 61 | 81.41 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 64 | 81.48 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 14 |
| 68 | 81.53 | wind | 7.0 | 720 | < th | dose independent | rect. | 22 | 19 |
| 69 | 81.55 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 72 | 81.55 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 76 | 81.58 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 12 |
| 91 | 81.70 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 4 |
| 103 | 81.81 | wind | 7.0 | 720 | > th | dose independent | rect. | 12 | 2 |
| 108 | 81.84 | wind | 7.0 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 118 | 81.86 | wind | 7.0 | 720 | < th | dose independent | rect. | 12 | 7 |
| 132 | 81.92 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 17 |
| 134 | 81.93 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 1 |
| 136 | 81.93 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 162 | 82.02 | wind | 9.0 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 163 | 82.02 | wind | 5.0 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 172 | 82.05 | wind | 7.0 | 720 | > th | dose independent | rect. | 11 | 5 |
| 177 | 82.07 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 20 |
| 180 | 82.09 | wind | 7.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 190 | 82.12 | wind | 7.0 | 720 | > th | dose independent | rect. | 3 | 13 |
| 193 | 82.12 | wind | 9.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 213 | 82.16 | wind | 9.0 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 246 | 82.20 | wind | 7.0 | 30 | > th | dose independent | rect. | 13 | 22 |
| 256 | 82.22 | wind | 7.0 | 720 | < th | dose independent | rect. | 10 | 9 |
| 263 | 82.23 | wind | 7.0 | 720 | > th | dose independent | sin | 1 | NA |
| 271 | 82.24 | wind | 7.0 | 720 | < th | dose independent | sin | 23 | NA |
| 273 | 82.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 275 | 82.24 | wind | 5.0 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 276 | 82.25 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 295 | 82.26 | radiation | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 302 | 82.26 | wind | 7.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 310 | 82.27 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 322 | 82.28 | humidity | 80.0 | 90 | > th | dose independent | rect. | 10 | 19 |
| 339 | 82.29 | wind | 5.0 | 720 | > th | dose dependent | sin | 0 | NA |
| 343 | 82.30 | wind | 5.0 | 10 | > th | dose independent | rect. | 23 | 1 |
| 374 | 82.32 | wind | 7.0 | 720 | < th | dose independent | rect. | 12 | 23 |
| 376 | 82.32 | wind | 1.0 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 396 | 82.35 | wind | 9.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 450 | 82.40 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 452 | 82.40 | wind | 3.0 | 10 | > th | dose dependent | rect. | 19 | 6 |
| 456 | 82.41 | wind | 1.0 | 10 | > th | dose independent | rect. | 1 | 10 |
| 487 | 82.44 | wind | 7.0 | 30 | > th | dose independent | rect. | 13 | 8 |
| 488 | 82.44 | humidity | 80.0 | 90 | > th | dose independent | rect. | 19 | 18 |
| 502 | 82.45 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 506 | 82.45 | wind | 5.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 595 | 82.52 | wind | 9.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 646 | 82.56 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 652 | 82.56 | humidity | 80.0 | 90 | > th | dose independent | rect. | 21 | 15 |
| 657 | 82.56 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 662 | 82.57 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 699 | 82.59 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 715 | 82.61 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 720 | 82.61 | wind | 7.0 | 30 | < th | dose independent | rect. | 13 | 15 |
| 739 | 82.62 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 806 | 82.65 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 828 | 82.66 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 843 | 82.67 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 855 | 82.67 | humidity | 70.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 856 | 82.67 | wind | 7.0 | 720 | > th | dose independent | rect. | 18 | 22 |
| 861 | 82.67 | wind | 9.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 872 | 82.68 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 13 |
| 881 | 82.68 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 887 | 82.68 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 912 | 82.69 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 22 |
| 932 | 82.69 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 946 | 82.70 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 947 | 82.70 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 968 | 82.70 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 969 | 82.70 | wind | 1.0 | 30 | < th | dose dependent | rect. | 2 | 3 |
| 995 | 82.71 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 3 |