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Os06g0652000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to T3/T7-like RNA polymerase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0252) R2 : 0.924
β1 : 0.703 (0.0923) R2dD : 0.01 R2D : 0.00544
β2 : 2.86 (0.0684) R2dC : 0.36 R2C : 0.632
β3 : -2.63 (0.0713) R2dE : 0.281 R2E : 0.556
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0724 (0.0541) R2dN8 : 0.000404 R2N8 : 0.0034
σ : 0.471
deviance : 102.38
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_____
C
peak time of C : 14.4
E
wheather : radiation
threshold : 173
memory length : 267
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.59
open length of G : 2.84

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.72 0.455 10.2 0.667 2.88 -2.63 -1.61 -1.3 -0.0929 14.4 68.4 261 2.78 2.65
96.84 0.458 10.2 0.739 2.85 -2.66 -1.24 -- -0.0683 14.4 87.35 266 2.67 2.71
101.66 0.47 10.2 0.664 2.87 -2.61 -- -0.586 -0.0852 14.4 134.7 265 2.67 2.75
102.38 0.471 10.2 0.703 2.86 -2.63 -- -- -0.0724 14.4 173 267 2.59 2.84
435.84 0.972 10.2 0.477 -- -4.21 -- 1.27 -0.175 -- 490.6 280 1.64 3.32
274.66 0.777 10.3 0.61 4.37 -- -0.695 -- -0.262 15.8 -- -- -- --
276.08 0.778 10.3 0.6 4.37 -- -- -- -0.266 15.8 -- -- -- --
373.64 0.9 10.2 0.785 -- -3.96 -- -- -0.0845 -- 382 354 0.0111 4.63
115.13 0.5 10.2 -- 2.86 -2.66 -- -- -0.156 14.4 191.3 272 2.55 3.02
1327.14 1.7 10.3 0.419 -- -- -- -- -0.383 -- -- -- -- --
285.56 0.79 10.3 -- 4.36 -- -- -- -0.333 15.8 -- -- -- --
386.67 0.916 10.3 -- -- -3.93 -- -- -0.196 -- 387.1 355 0.0016 4.58
1331.76 1.7 10.3 -- -- -- -- -- -0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.15 wind 9.0 270 < th dose independent rect. 5 22
2 95.22 wind 5.0 270 < th dose independent rect. 3 2
3 95.29 wind 5.0 270 < th dose independent rect. 2 4
5 95.73 wind 9.0 270 < th dose independent rect. 6 20
7 96.34 radiation 1.0 270 < th dose dependent rect. 3 2
8 96.39 precipitation 0.1 270 < th dose independent rect. 2 4
9 96.39 precipitation 0.1 270 < th dose dependent rect. 2 4
10 96.53 precipitation 0.1 270 < th dose independent rect. 3 2
11 96.53 precipitation 0.1 270 < th dose dependent rect. 3 2
13 97.09 temperature 10.0 270 > th dose independent rect. 3 2
15 97.09 temperature 30.0 270 < th dose independent rect. 3 2
16 97.09 humidity 50.0 270 > th dose independent rect. 3 2
19 97.09 atmosphere 995.0 270 > th dose independent rect. 3 2
20 97.09 atmosphere 1010.0 270 < th dose independent rect. 3 2
22 97.09 radiation 20.0 270 < th dose independent rect. 3 2
25 97.09 temperature 10.0 270 > th dose independent rect. 5 22
26 97.10 radiation 40.0 270 < th dose dependent rect. 3 2
27 97.11 radiation 20.0 270 < th dose dependent rect. 3 2
30 97.24 radiation 1.0 270 < th dose independent rect. 3 2
32 97.37 atmosphere 1010.0 270 < th dose independent rect. 2 4
33 97.44 radiation 10.0 270 < th dose independent rect. 2 4
34 97.61 radiation 30.0 270 < th dose dependent rect. 2 4
38 97.72 temperature 10.0 270 > th dose independent rect. 2 4
40 97.72 temperature 30.0 270 < th dose independent rect. 2 4
41 97.72 humidity 50.0 270 > th dose independent rect. 2 4
44 97.72 atmosphere 995.0 270 > th dose independent rect. 2 4
49 97.72 temperature 10.0 270 > th dose independent rect. 6 20
52 99.43 radiation 10.0 270 < th dose independent rect. 1 6
53 100.12 precipitation 0.1 270 < th dose independent rect. 6 20
54 100.12 precipitation 0.1 270 < th dose dependent rect. 6 20
55 100.41 radiation 30.0 270 < th dose dependent rect. 1 6
58 101.45 wind 9.0 270 < th dose independent rect. 7 18
59 101.55 radiation 20.0 90 < th dose independent rect. 3 6
60 101.55 temperature 10.0 270 > th dose dependent rect. 2 4
62 102.02 wind 7.0 270 < th dose independent rect. 1 6
63 102.21 precipitation 0.1 270 < th dose independent rect. 1 6
64 102.21 precipitation 0.1 270 < th dose dependent rect. 1 6
66 102.59 humidity 70.0 270 > th dose independent rect. 1 6
68 102.88 humidity 50.0 270 > th dose dependent rect. 3 2
69 103.05 wind 9.0 270 < th dose dependent rect. 2 4
72 103.23 temperature 10.0 270 > th dose independent rect. 1 6
74 103.23 temperature 30.0 270 < th dose independent rect. 1 6
75 103.23 humidity 50.0 270 > th dose independent rect. 1 6
77 103.23 atmosphere 995.0 270 > th dose independent rect. 1 6
78 103.23 atmosphere 1015.0 270 < th dose independent rect. 1 6
80 103.23 temperature 10.0 270 > th dose independent rect. 7 18
81 103.46 wind 9.0 270 < th dose dependent rect. 3 2
83 103.93 temperature 10.0 270 > th dose dependent rect. 3 2
88 104.91 precipitation 0.1 270 < th dose independent rect. 7 18
89 104.91 precipitation 0.1 270 < th dose dependent rect. 7 18
90 104.95 humidity 50.0 270 > th dose dependent rect. 2 4
104 106.35 precipitation 0.1 270 < th dose independent rect. 5 22
105 106.35 precipitation 0.1 270 < th dose dependent rect. 5 22
195 111.29 wind 9.0 270 < th dose dependent rect. 1 6
196 111.30 radiation 1.0 270 < th dose independent rect. 2 10
202 111.57 humidity 50.0 270 > th dose dependent rect. 1 6
232 111.97 temperature 10.0 270 > th dose dependent rect. 1 6
250 113.51 radiation 1.0 270 < th dose dependent rect. 2 10
284 115.06 atmosphere 995.0 270 > th dose independent rect. 6 20
291 115.43 radiation 1.0 270 < th dose dependent rect. 2 15
314 117.18 wind 1.0 270 > th dose independent rect. 2 4
337 118.02 atmosphere 995.0 270 > th dose independent rect. 7 18
349 118.77 wind 1.0 270 > th dose independent rect. 3 2
368 119.80 wind 9.0 270 < th dose independent rect. 6 9
369 119.83 precipitation 0.1 270 < th dose independent rect. 6 9
370 119.83 precipitation 0.1 270 < th dose dependent rect. 6 9
381 120.38 radiation 40.0 270 < th dose independent rect. 15 15
394 120.72 temperature 10.0 270 > th dose independent rect. 6 9
395 120.72 atmosphere 1015.0 270 < th dose independent rect. 6 9
396 120.72 temperature 10.0 270 > th dose independent rect. 15 15
399 121.35 wind 1.0 270 > th dose independent rect. 1 6
402 121.53 atmosphere 995.0 270 > th dose independent rect. 6 9
426 123.71 wind 7.0 270 < th dose independent rect. 19 7
427 123.90 wind 9.0 270 < th dose independent rect. 15 15
429 124.03 temperature 15.0 270 > th dose independent rect. 11 10
442 125.03 temperature 10.0 270 > th dose independent rect. 19 7
443 125.03 temperature 30.0 270 < th dose independent rect. 19 7
444 125.03 humidity 50.0 270 > th dose independent rect. 19 7
445 125.03 atmosphere 995.0 270 > th dose independent rect. 19 7
446 125.03 radiation 1.0 270 < th dose independent rect. 19 7
451 125.03 temperature 10.0 270 > th dose independent rect. 2 17
452 125.03 atmosphere 1015.0 270 < th dose independent rect. 2 17
453 125.03 radiation 1.0 270 < th dose dependent rect. 19 7
460 125.17 wind 1.0 270 > th dose independent rect. 7 18
461 125.30 precipitation 0.1 270 < th dose independent rect. 15 15
462 125.30 atmosphere 995.0 270 > th dose dependent rect. 3 2
463 125.30 precipitation 0.1 270 < th dose dependent rect. 15 15
465 125.36 precipitation 0.1 270 < th dose independent rect. 2 17
466 125.36 precipitation 0.1 270 < th dose dependent rect. 2 17
477 125.74 wind 9.0 10 < th dose independent rect. 8 20
480 125.90 wind 5.0 10 < th dose independent rect. 4 4
481 125.92 precipitation 0.1 270 < th dose independent rect. 19 7
482 125.92 precipitation 0.1 270 < th dose dependent rect. 19 7
509 127.13 wind 9.0 10 < th dose independent rect. 4 4
510 127.13 temperature 10.0 10 > th dose independent rect. 4 4
512 127.13 temperature 30.0 10 < th dose independent rect. 4 4
513 127.13 humidity 50.0 10 > th dose independent rect. 4 4
515 127.13 atmosphere 995.0 10 > th dose independent rect. 4 4
516 127.13 atmosphere 1015.0 10 < th dose independent rect. 4 4
517 127.13 temperature 10.0 10 > th dose independent rect. 8 20
522 127.21 precipitation 0.1 10 < th dose independent rect. 4 4
523 127.21 precipitation 0.1 10 < th dose dependent rect. 4 4
525 127.28 radiation 40.0 10 < th dose dependent rect. 4 5
534 127.49 wind 9.0 10 < th dose dependent rect. 3 6
542 127.91 wind 9.0 270 < th dose independent rect. 21 14
564 128.30 atmosphere 995.0 270 > th dose dependent rect. 2 4
565 128.31 wind 9.0 10 < th dose dependent rect. 4 4
586 128.65 temperature 10.0 270 > th dose independent rect. 21 14
587 128.65 atmosphere 995.0 270 > th dose independent rect. 21 14
592 128.73 atmosphere 1015.0 270 < th dose dependent rect. 3 2
604 128.93 atmosphere 1015.0 270 < th dose independent rect. 11 10
613 129.14 wind 9.0 270 < th dose independent rect. 2 17
650 129.69 humidity 50.0 270 > th dose independent rect. 21 14
661 129.88 radiation 1.0 270 < th dose dependent sin 2 NA
775 130.84 radiation 1.0 270 < th dose independent sin 3 NA
794 131.09 precipitation 0.1 10 < th dose independent rect. 8 19
795 131.09 precipitation 0.1 10 < th dose dependent rect. 8 19
848 131.87 temperature 10.0 10 > th dose dependent rect. 3 5
882 132.73 radiation 40.0 270 < th dose dependent rect. 15 15
887 132.84 precipitation 0.1 270 < th dose independent rect. 21 14
888 132.84 precipitation 0.1 270 < th dose dependent rect. 21 14
916 133.50 humidity 50.0 270 > th dose independent rect. 6 20
926 134.03 atmosphere 995.0 270 > th dose independent rect. 15 15
930 134.19 humidity 50.0 270 > th dose independent rect. 6 8
931 134.22 wind 1.0 270 > th dose independent rect. 6 20
957 134.94 precipitation 0.1 270 < th dose independent rect. 11 10
958 134.94 precipitation 0.1 270 < th dose dependent rect. 11 10
960 134.98 atmosphere 1015.0 270 < th dose independent rect. 7 18
994 135.44 wind 1.0 270 > th dose independent rect. 11 10
999 135.49 radiation 1.0 270 > th dose independent rect. 6 9