Os06g0649600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0649600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.02 | 0.54 | 8.94 | -3.91 | 1.1 | -1.51 | 0.538 | -1.35 | 1.39 | 0.288 | 31.28 | 20921 | 7 | -- |
| 133.47 | 0.538 | 8.95 | -3.66 | 1.05 | -1.63 | 0.552 | -- | 1.48 | 0.381 | 30.83 | 20283 | 7.51 | -- |
| 132.84 | 0.537 | 8.95 | -3.9 | 1.1 | -1.51 | -- | -1.3 | 1.39 | 0.206 | 31.25 | 20886 | 7.56 | -- |
| 134.54 | 0.54 | 8.94 | -3.64 | 1.06 | -1.67 | -- | -- | 1.5 | 0.338 | 30.92 | 20296 | 7.81 | -- |
| 203.56 | 0.664 | 8.9 | -3.78 | -- | -1.54 | -- | -1.08 | 1.47 | -- | 30.98 | 20386 | 7.74 | -- |
| 220.1 | 0.696 | 9.08 | -3.52 | 1.01 | -- | 0.447 | -- | 0.845 | 0.381 | -- | -- | -- | -- |
| 220.95 | 0.696 | 9.08 | -3.53 | 1.01 | -- | -- | -- | 0.844 | 0.316 | -- | -- | -- | -- |
| 204.88 | 0.667 | 8.93 | -3.65 | -- | -1.67 | -- | -- | 1.5 | -- | 31.31 | 20379 | 7.75 | -- |
| 464.1 | 1 | 8.87 | -- | 1.05 | -1.53 | -- | -- | 1.9 | 0.656 | 30.01 | 19923 | 8.68 | -- |
| 284.65 | 0.788 | 9.06 | -3.5 | -- | -- | -- | -- | 0.859 | -- | -- | -- | -- | -- |
| 549.75 | 1.1 | 9 | -- | 0.958 | -- | -- | -- | 1.24 | 0.122 | -- | -- | -- | -- |
| 526.3 | 1.07 | 8.87 | -- | -- | -1.49 | -- | -- | 1.84 | -- | 30 | 20334 | 9.43 | -- |
| 607.5 | 1.15 | 8.98 | -- | -- | -- | -- | -- | 1.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 2 | 119.80 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 4 | 120.80 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 5 | 120.87 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 6 | 120.93 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 10 | 123.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 12 | 124.68 | wind | 3.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 14 | 125.41 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 15 | 125.58 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 18 | 125.93 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 20 | 126.12 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 36 | 126.64 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 37 | 126.65 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 41 | 126.69 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 42 | 126.69 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 43 | 126.70 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 72 | 127.20 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 110 | 127.28 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 125 | 127.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 130 | 127.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 142 | 127.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 151 | 127.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 10 |
| 152 | 127.66 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 153 | 127.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 154 | 127.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 173 | 127.78 | temperature | 30.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 228 | 128.10 | temperature | 30.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 229 | 128.12 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 235 | 128.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 236 | 128.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 239 | 128.39 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 257 | 128.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 258 | 128.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 261 | 128.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 285 | 128.82 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 312 | 129.33 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 363 | 130.06 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 401 | 130.59 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 473 | 131.29 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 515 | 131.68 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 516 | 131.72 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 522 | 131.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 540 | 131.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 541 | 131.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 543 | 131.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 12 |
| 561 | 132.05 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 588 | 132.28 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 630 | 132.60 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 666 | 132.76 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 0 | NA |
| 669 | 132.77 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 0 | NA |
| 670 | 132.77 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 671 | 132.77 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 0 | NA |
| 737 | 133.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 755 | 133.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 788 | 133.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 790 | 133.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 797 | 133.31 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 814 | 133.38 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 839 | 133.43 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 840 | 133.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 846 | 133.45 | wind | 5.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 868 | 133.48 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 869 | 133.49 | temperature | 25.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 903 | 133.55 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 924 | 133.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 928 | 133.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 992 | 133.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |