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Os06g0649000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 28.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.85 (0.0742) R2 : 0.428
β1 : 1.3 (0.288) R2dD : 0.0349 R2D : 0.0939
β2 : 1.2 (0.16) R2dC : 0.0688 R2C : 0.074
β3 : 4.24 (0.421) R2dE : 0.305 R2E : -0.0378
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.1 (1.41) R2dD*E : 0.191 R2D*E : -0.112
γ1 : 1.72 (0.153) R2dN8 : 0.24 R2N8 : -0.0109
σ : 1.26
deviance : 734.58
__
_____
C
peak time of C : 0.638
E
wheather : wind
threshold : 0.6354
memory length : 4378
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.03
open length of G : 0.993

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
735.78 1.27 6.83 1.4 1.18 3.73 1.05 -10.8 1.76 0.651 0.6652 4266 6.02 1.03
859.75 1.37 6.72 1.86 1.47 3.4 1.08 -- 1.67 1.17 0.4111 4377 5.97 1.85
734.58 1.26 6.85 1.3 1.2 4.24 -- -12.1 1.72 0.638 0.6354 4378 6.03 0.993
819.98 1.33 6.67 1.96 1.26 4.29 -- -- 1.91 0.104 1.378 4652 6.08 0.383
821.73 1.34 6.84 1.33 -- 4.33 -- -12.4 1.78 -- 0.616 4324 6.03 0.999
904.39 1.41 6.67 2.81 1.21 -- 1.15 -- 1.25 0.722 -- -- -- --
910.04 1.41 6.68 2.77 1.21 -- -- -- 1.25 0.776 -- -- -- --
871.07 1.37 6.55 2.4 -- 2.88 -- -- 1.76 -- 1.2 4438 6.04 0.433
911.05 1.41 6.57 -- 1.32 4.14 -- -- 1.75 23.8 1.5 4451 6.06 0.4
1001.7 1.48 6.66 2.81 -- -- -- -- 1.27 -- -- -- -- --
1111.81 1.56 6.75 -- 1.26 -- -- -- 0.937 0.877 -- -- -- --
998.51 1.47 6.53 -- -- 3.65 -- -- 1.8 -- 1.524 4472 6 0.467
1210.11 1.62 6.73 -- -- -- -- -- 0.956 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 750.24 wind 1.0 4320 < th dose dependent rect. 6 1
2 766.83 humidity 90.0 14400 > th dose dependent rect. 5 11
5 769.04 humidity 90.0 14400 > th dose dependent rect. 6 1
22 776.93 humidity 90.0 14400 > th dose dependent sin 1 NA
35 780.31 wind 1.0 4320 > th dose independent rect. 5 2
45 782.24 humidity 90.0 14400 > th dose independent rect. 6 1
52 783.95 wind 1.0 4320 < th dose independent rect. 5 2
54 784.20 precipitation 0.1 43200 < th dose independent rect. 1 5
55 784.20 precipitation 0.1 43200 < th dose dependent rect. 1 5
58 784.59 precipitation 0.1 43200 > th dose independent rect. 1 5
60 784.65 precipitation 0.1 43200 > th dose dependent rect. 1 5
61 784.82 atmosphere 995.0 43200 < th dose dependent rect. 23 10
64 785.23 atmosphere 995.0 43200 > th dose independent rect. 1 9
65 785.23 atmosphere 995.0 43200 < th dose independent rect. 1 9
67 785.37 humidity 90.0 14400 > th dose dependent rect. 12 3
68 785.38 precipitation 0.1 43200 > th dose dependent rect. 24 7
69 785.39 atmosphere 995.0 43200 > th dose independent rect. 23 12
71 785.40 atmosphere 995.0 43200 > th dose independent rect. 21 15
72 785.41 atmosphere 995.0 43200 < th dose independent rect. 23 12
75 785.46 atmosphere 995.0 43200 > th dose independent rect. 19 17
78 785.51 atmosphere 995.0 43200 > th dose independent rect. 3 6
84 785.72 atmosphere 995.0 43200 < th dose independent rect. 21 15
89 785.92 precipitation 0.1 43200 < th dose independent rect. 24 7
91 785.92 precipitation 0.1 43200 < th dose dependent rect. 24 7
92 786.06 precipitation 0.1 43200 > th dose independent rect. 24 7
95 786.09 atmosphere 995.0 43200 < th dose independent rect. 2 7
111 786.94 atmosphere 995.0 43200 > th dose independent rect. 5 3
113 787.24 precipitation 0.1 43200 < th dose independent rect. 2 3
114 787.24 precipitation 0.1 43200 < th dose dependent rect. 2 3
115 787.26 radiation 1.0 14400 > th dose independent rect. 18 11
120 787.55 humidity 90.0 14400 < th dose independent rect. 6 1
123 787.64 atmosphere 995.0 43200 < th dose dependent sin 10 NA
124 787.69 atmosphere 995.0 43200 < th dose independent rect. 4 4
138 788.16 precipitation 0.1 43200 > th dose independent rect. 2 3
164 788.92 humidity 90.0 14400 > th dose dependent rect. 18 1
166 788.94 temperature 30.0 4320 > th dose dependent rect. 8 1
186 789.03 precipitation 0.1 43200 > th dose dependent rect. 1 11
193 789.34 humidity 90.0 14400 < th dose independent rect. 12 3
194 789.34 humidity 90.0 14400 > th dose dependent rect. 10 6
202 789.70 precipitation 0.1 43200 > th dose dependent rect. 2 3
204 789.72 wind 5.0 43200 < th dose dependent rect. 8 1
205 789.72 precipitation 0.1 43200 > th dose dependent rect. 1 13
210 789.81 precipitation 0.1 43200 < th dose independent rect. 4 12
211 789.81 precipitation 0.1 43200 < th dose dependent rect. 4 12
212 789.83 temperature 20.0 14400 > th dose independent rect. 16 1
214 789.88 precipitation 0.1 43200 > th dose independent rect. 4 12
215 789.89 precipitation 0.1 43200 < th dose independent rect. 1 11
217 789.89 precipitation 0.1 43200 < th dose dependent rect. 1 11
223 789.96 humidity 90.0 14400 > th dose dependent rect. 5 22
239 790.17 wind 3.0 43200 > th dose independent rect. 8 1
256 790.41 precipitation 0.1 43200 < th dose independent rect. 1 13
258 790.41 precipitation 0.1 43200 < th dose dependent rect. 1 13
260 790.43 humidity 90.0 14400 > th dose independent rect. 2 14
265 790.53 precipitation 0.1 43200 > th dose independent rect. 1 13
283 790.76 precipitation 0.1 43200 < th dose independent rect. 9 4
285 790.76 precipitation 0.1 43200 < th dose dependent rect. 9 4
328 791.20 wind 3.0 43200 < th dose independent rect. 8 1
330 791.22 precipitation 0.1 43200 > th dose independent rect. 9 4
332 791.22 precipitation 0.1 43200 > th dose dependent rect. 9 4
338 791.25 humidity 70.0 14400 > th dose independent rect. 14 1
342 791.34 precipitation 0.1 43200 > th dose dependent sin 5 NA
343 791.35 atmosphere 995.0 43200 < th dose dependent rect. 4 4
359 791.46 temperature 30.0 4320 > th dose independent rect. 8 1
400 791.85 radiation 10.0 4320 > th dose independent rect. 17 13
401 791.88 atmosphere 995.0 43200 < th dose independent sin 7 NA
409 792.04 precipitation 0.1 43200 < th dose independent sin 5 NA
410 792.04 precipitation 0.1 43200 < th dose dependent sin 5 NA
413 792.07 precipitation 0.1 43200 > th dose independent sin 5 NA
420 792.12 temperature 20.0 14400 > th dose independent rect. 8 1
453 792.55 humidity 90.0 14400 > th dose independent rect. 12 3
465 792.70 precipitation 0.1 43200 < th dose independent rect. 12 1
466 792.70 precipitation 0.1 43200 < th dose dependent rect. 12 1
481 792.96 temperature 20.0 14400 < th dose independent rect. 16 2
503 793.32 radiation 1.0 14400 > th dose independent rect. 18 1
516 793.36 humidity 90.0 14400 > th dose dependent rect. 8 23
523 793.49 precipitation 0.1 43200 > th dose independent rect. 12 1
524 793.49 precipitation 0.1 43200 > th dose dependent rect. 12 1
535 793.59 humidity 90.0 14400 > th dose independent rect. 10 6
537 793.62 humidity 90.0 14400 > th dose dependent no NA NA
556 793.82 radiation 10.0 14400 < th dose dependent rect. 18 11
566 793.94 precipitation 0.1 43200 < th dose independent rect. 10 1
568 793.94 precipitation 0.1 43200 < th dose dependent rect. 10 1
581 794.04 precipitation 0.1 43200 > th dose independent rect. 10 1
582 794.04 precipitation 0.1 43200 > th dose dependent rect. 10 1
584 794.08 humidity 70.0 14400 < th dose independent rect. 14 1
591 794.21 precipitation 0.1 43200 < th dose independent rect. 4 5
592 794.21 precipitation 0.1 43200 < th dose dependent rect. 4 5
598 794.28 precipitation 0.1 43200 > th dose independent rect. 7 6
611 794.39 precipitation 0.1 43200 > th dose dependent rect. 7 6
621 794.44 humidity 90.0 14400 > th dose dependent rect. 14 23
646 794.63 precipitation 0.1 43200 < th dose independent rect. 7 6
647 794.63 precipitation 0.1 43200 < th dose dependent rect. 7 6
665 794.92 temperature 20.0 14400 < th dose independent rect. 8 1
679 795.12 humidity 90.0 14400 < th dose independent rect. 14 1
685 795.20 radiation 10.0 14400 < th dose dependent rect. 18 8
709 795.45 radiation 10.0 14400 < th dose dependent rect. 18 2
721 795.64 temperature 20.0 14400 > th dose independent rect. 5 13
739 795.82 humidity 90.0 14400 > th dose dependent rect. 9 18
758 796.02 temperature 20.0 14400 > th dose independent rect. 6 5
792 796.19 atmosphere 995.0 43200 > th dose independent sin 7 NA
800 796.26 humidity 90.0 14400 > th dose independent sin 2 NA
821 796.48 temperature 20.0 14400 < th dose independent rect. 5 13
823 796.51 radiation 1.0 14400 > th dose independent rect. 6 2
842 796.66 wind 1.0 43200 > th dose dependent rect. 8 1
849 796.76 radiation 1.0 14400 < th dose independent rect. 6 2
850 796.77 temperature 30.0 4320 < th dose independent rect. 7 2
888 797.08 temperature 20.0 14400 < th dose independent rect. 6 4
906 797.18 temperature 30.0 4320 < th dose independent rect. 19 14
918 797.28 radiation 1.0 14400 > th dose independent rect. 18 16
924 797.32 temperature 20.0 14400 > th dose independent rect. 5 8
929 797.35 radiation 1.0 14400 > th dose independent rect. 18 21
938 797.44 radiation 1.0 14400 > th dose independent rect. 18 19
940 797.45 radiation 10.0 4320 > th dose independent rect. 16 15
951 797.51 humidity 90.0 14400 > th dose dependent rect. 14 5
964 797.61 temperature 20.0 14400 > th dose independent sin 0 NA
970 797.64 wind 3.0 43200 < th dose dependent rect. 6 3
985 797.75 temperature 20.0 14400 < th dose independent rect. 5 8