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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0648600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.43 (0.0349) R2 : 0.486
β1 : 1.64 (0.131) R2dD : 0.203 R2D : 0.0966
β2 : 0.847 (0.0945) R2dC : 0.125 R2C : 0.23
β3 : 1.4 (0.172) R2dE : 0.118 R2E : 0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.531 (0.0785) R2dN8 : 0.0805 R2N8 : -0.0258
σ : 0.637
deviance : 187.06
__
_____
C
peak time of C : 0.371
E
wheather : temperature
threshold : 31.22
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.82 0.634 5.4 1.91 0.884 1.33 1.36 -1.48 0.582 0.709 31.4 10 -- --
183.49 0.631 5.43 1.67 0.864 1.32 0.928 -- 0.535 0.577 30.4 9 -- --
187.07 0.637 5.43 1.66 0.844 1.42 -- -0.0182 0.537 0.359 31.21 9 -- --
187.06 0.637 5.43 1.64 0.847 1.4 -- -- 0.531 0.371 31.22 9 -- --
219.61 0.69 5.38 1.81 -- 2.13 -- 0.21 0.692 -- 30.1 2 -- --
206.37 0.673 5.48 1.36 1.27 -- 1.14 -- 0.29 1.12 -- -- -- --
211.73 0.681 5.49 1.32 1.27 -- -- -- 0.284 1.04 -- -- -- --
219.66 0.69 5.38 1.84 -- 2.13 -- -- 0.703 -- 30.1 2 -- --
251.14 0.742 5.49 -- 1.08 0.692 -- -- 0.24 0.846 31.22 9 -- --
312.22 0.826 5.47 1.37 -- -- -- -- 0.309 -- -- -- -- --
257.88 0.751 5.52 -- 1.29 -- -- -- 0.137 1.08 -- -- -- --
303.87 0.812 5.45 -- -- 1.7 -- -- 0.398 -- 31.3 3 -- --
361.82 0.888 5.5 -- -- -- -- -- 0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.71 temperature 15 720 > th dose dependent rect. 21 16
2 173.96 temperature 15 720 > th dose dependent sin 7 NA
34 176.39 humidity 80 43200 > th dose independent rect. 9 2
41 176.67 temperature 20 720 > th dose dependent rect. 23 10
48 176.84 temperature 15 720 > th dose dependent rect. 1 10
53 177.14 humidity 80 43200 > th dose dependent rect. 8 2
61 177.44 radiation 1 14400 < th dose independent rect. 17 13
69 177.74 radiation 1 14400 > th dose independent rect. 17 1
74 177.86 radiation 1 14400 > th dose independent rect. 17 13
78 177.96 radiation 1 14400 < th dose independent rect. 17 1
83 178.12 humidity 80 43200 > th dose dependent rect. 6 5
102 178.43 humidity 80 43200 < th dose independent rect. 9 2
121 178.88 humidity 80 43200 > th dose dependent rect. 19 1
123 178.99 humidity 90 43200 < th dose independent rect. 6 2
125 179.00 temperature 30 720 < th dose dependent sin 4 NA
131 179.04 temperature 30 720 < th dose dependent rect. 24 15
140 179.17 radiation 1 14400 < th dose independent rect. 17 5
141 179.17 radiation 1 14400 < th dose independent rect. 17 9
143 179.18 radiation 1 14400 < th dose independent rect. 17 7
171 179.37 wind 9 43200 > th dose dependent rect. 17 10
173 179.38 humidity 90 43200 > th dose independent rect. 6 1
178 179.44 wind 9 43200 > th dose dependent rect. 17 8
183 179.52 radiation 1 14400 < th dose independent rect. 5 1
184 179.52 wind 9 43200 < th dose independent rect. 18 9
188 179.53 temperature 15 270 > th dose dependent sin 3 NA
200 179.63 wind 9 43200 > th dose independent rect. 18 9
206 179.70 radiation 1 14400 > th dose independent rect. 5 1
214 179.78 wind 9 43200 < th dose independent rect. 18 7
222 179.82 wind 9 43200 > th dose independent rect. 18 6
223 179.82 temperature 20 720 > th dose independent rect. 1 8
225 179.82 humidity 90 43200 < th dose independent rect. 5 11
228 179.85 humidity 90 43200 < th dose independent rect. 5 9
230 179.86 wind 9 43200 > th dose independent rect. 17 14
242 179.94 radiation 1 14400 < th dose independent sin 12 NA
262 180.01 temperature 20 720 > th dose independent sin 7 NA
271 180.09 temperature 20 720 > th dose independent rect. 3 5
272 180.09 wind 9 43200 < th dose independent rect. 17 14
279 180.12 temperature 20 720 > th dose independent rect. 23 12
282 180.15 temperature 30 720 < th dose dependent rect. 3 8
296 180.21 temperature 30 30 < th dose dependent rect. 9 23
308 180.30 temperature 20 1440 > th dose dependent rect. 16 6
311 180.32 temperature 20 720 > th dose independent rect. 1 10
316 180.33 temperature 20 1440 > th dose dependent rect. 17 4
321 180.35 wind 7 43200 > th dose dependent rect. 18 3
322 180.36 temperature 20 1440 > th dose dependent rect. 16 8
334 180.42 radiation 1 14400 > th dose independent sin 11 NA
352 180.47 humidity 80 14400 > th dose dependent rect. 19 9
355 180.48 temperature 20 1440 > th dose dependent rect. 18 1
360 180.49 humidity 90 43200 > th dose independent rect. 6 3
400 180.58 temperature 20 720 > th dose independent rect. 23 14
402 180.59 humidity 80 43200 > th dose independent rect. 17 3
404 180.59 humidity 90 43200 > th dose independent rect. 6 9
423 180.62 radiation 1 14400 < th dose independent rect. 23 7
428 180.63 radiation 1 14400 < th dose independent rect. 1 5
455 180.71 humidity 80 14400 > th dose dependent rect. 21 6
499 180.83 temperature 30 720 < th dose dependent rect. 5 6
508 180.85 wind 9 43200 > th dose dependent rect. 20 3
538 180.89 humidity 80 14400 > th dose dependent rect. 22 1
547 180.91 temperature 20 720 > th dose independent rect. 4 2
549 180.91 radiation 1 14400 < th dose dependent rect. 17 1
565 180.96 humidity 80 43200 < th dose independent rect. 16 4
611 181.01 wind 7 43200 > th dose independent rect. 15 18
628 181.04 wind 7 43200 < th dose independent rect. 15 18
642 181.09 humidity 80 43200 > th dose dependent rect. 6 15
643 181.10 wind 7 43200 > th dose independent rect. 18 3
677 181.17 humidity 90 43200 < th dose independent rect. 5 16
694 181.20 humidity 90 43200 < th dose independent sin 1 NA
727 181.24 radiation 1 14400 < th dose dependent rect. 17 15
732 181.26 radiation 1 14400 < th dose dependent rect. 5 2
734 181.26 radiation 1 14400 < th dose dependent rect. 23 8
736 181.26 radiation 1 14400 < th dose dependent rect. 19 12
747 181.28 wind 7 43200 < th dose independent rect. 18 3
844 181.42 wind 7 43200 > th dose dependent sin 12 NA
908 181.48 temperature 30 10 < th dose dependent rect. 6 23
909 181.49 humidity 80 43200 > th dose independent rect. 8 5
938 181.52 radiation 1 14400 < th dose dependent sin 11 NA
953 181.54 humidity 80 43200 < th dose independent rect. 18 1
982 181.55 radiation 1 43200 < th dose independent rect. 11 19
992 181.57 radiation 1 43200 > th dose independent rect. 11 19
995 181.57 temperature 30 10 < th dose dependent rect. 3 23