Os06g0648500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0648500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.8 | 0.438 | 10.4 | -0.154 | 1.1 | -1.32 | -0.207 | 0.62 | 0.937 | 5.16 | 0.9429 | 255 | -- | -- |
| 87.35 | 0.435 | 10.4 | -0.161 | 1.12 | -1.31 | -0.463 | -- | 0.932 | 5.2 | 0.9149 | 239 | -- | -- |
| 86.88 | 0.434 | 10.4 | -0.154 | 1.11 | -1.31 | -- | 0.718 | 0.939 | 5.17 | 0.8598 | 253 | -- | -- |
| 87.87 | 0.437 | 10.4 | -0.155 | 1.13 | -1.31 | -- | -- | 0.938 | 5.24 | 0.8646 | 235 | -- | -- |
| 111.11 | 0.491 | 10.4 | -0.000947 | -- | -2.23 | -- | 1.52 | 1.07 | -- | -2.481e-06 | 411 | -- | -- |
| 109.99 | 0.492 | 10.4 | -0.209 | 1.81 | -- | -0.483 | -- | 0.84 | 3.93 | -- | -- | -- | -- |
| 110.67 | 0.493 | 10.4 | -0.203 | 1.81 | -- | -- | -- | 0.843 | 3.93 | -- | -- | -- | -- |
| 112.39 | 0.494 | 10.4 | -0.0732 | -- | -2.2 | -- | -- | 1.04 | -- | -5.172 | 376 | -- | -- |
| 88.52 | 0.438 | 10.4 | -- | 1.11 | -1.33 | -- | -- | 0.954 | 5.29 | 0.7599 | 236 | -- | -- |
| 289.2 | 0.795 | 10.4 | -0.129 | -- | -- | -- | -- | 0.891 | -- | -- | -- | -- | -- |
| 111.76 | 0.495 | 10.4 | -- | 1.8 | -- | -- | -- | 0.865 | 3.94 | -- | -- | -- | -- |
| 112.53 | 0.494 | 10.4 | -- | -- | -2.2 | -- | -- | 1.05 | -- | -5.398 | 376 | -- | -- |
| 289.64 | 0.794 | 10.4 | -- | -- | -- | -- | -- | 0.905 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.94 | radiation | 20 | 90 | < th | dose dependent | sin | 21 | NA |
| 4 | 85.99 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 16 | 86.03 | radiation | 40 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 24 | 86.45 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 25 | 86.48 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 37 | 86.54 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 39 | 86.61 | radiation | 40 | 270 | < th | dose dependent | sin | 0 | NA |
| 41 | 86.63 | radiation | 1 | 270 | > th | dose dependent | sin | 0 | NA |
| 54 | 86.78 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 62 | 86.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 66 | 86.98 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 85 | 87.07 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 177 | 87.39 | radiation | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 180 | 87.40 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 17 |
| 181 | 87.46 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 17 |
| 191 | 87.60 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 195 | 87.64 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 200 | 87.71 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 11 |
| 237 | 87.84 | radiation | 1 | 90 | > th | dose dependent | sin | 19 | NA |
| 245 | 87.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 246 | 87.94 | radiation | 30 | 270 | < th | dose independent | rect. | 10 | 23 |
| 394 | 88.28 | radiation | 10 | 90 | < th | dose independent | sin | 21 | NA |
| 405 | 88.33 | radiation | 10 | 90 | > th | dose independent | sin | 20 | NA |
| 443 | 88.60 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 452 | 88.69 | radiation | 40 | 270 | > th | dose independent | rect. | 11 | 23 |
| 454 | 88.71 | radiation | 40 | 270 | > th | dose independent | sin | 21 | NA |
| 456 | 88.72 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 14 |
| 473 | 88.83 | radiation | 40 | 270 | < th | dose independent | sin | 21 | NA |
| 480 | 88.85 | radiation | 30 | 270 | > th | dose independent | rect. | 9 | 6 |
| 481 | 88.85 | radiation | 30 | 270 | < th | dose independent | rect. | 21 | 23 |
| 740 | 89.14 | radiation | 30 | 270 | < th | dose independent | rect. | 9 | 11 |
| 779 | 89.28 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |
| 984 | 89.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 15 |