Os06g0647900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0647900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.35 | 0.602 | 5.41 | 2.04 | 0.671 | 0.914 | -0.619 | -1.91 | -0.0849 | 9.67 | 93.93 | 5672 | -- | -- |
| 173.02 | 0.613 | 5.41 | 2.04 | 0.673 | 0.934 | -0.707 | -- | -0.085 | 9.6 | 93.93 | 5646 | -- | -- |
| 165.56 | 0.599 | 5.4 | 2.04 | 0.662 | 0.922 | -- | -2.02 | -0.0824 | 9.75 | 93.98 | 5606 | -- | -- |
| 172.33 | 0.611 | 5.37 | 1.74 | 0.714 | 1.01 | -- | -- | -0.0582 | 9.71 | 93.92 | 5614 | -- | -- |
| 186.81 | 0.637 | 5.44 | 2.03 | -- | 1.21 | -- | -2.36 | -0.0469 | -- | 93.55 | 6486 | -- | -- |
| 187.08 | 0.641 | 5.46 | 1.67 | 0.705 | -- | -0.674 | -- | -0.345 | 9.88 | -- | -- | -- | -- |
| 188.82 | 0.643 | 5.46 | 1.64 | 0.707 | -- | -- | -- | -0.345 | 9.97 | -- | -- | -- | -- |
| 189.79 | 0.642 | 5.41 | 1.57 | -- | 1.19 | -- | -- | -0.0568 | -- | 93.49 | 5186 | -- | -- |
| 229.76 | 0.706 | 5.42 | -- | 0.662 | 1.32 | -- | -- | -0.179 | 9.65 | 91.01 | 5680 | -- | -- |
| 218.88 | 0.691 | 5.48 | 1.63 | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
| 259.77 | 0.754 | 5.5 | -- | 0.702 | -- | -- | -- | -0.528 | 9.8 | -- | -- | -- | -- |
| 245.63 | 0.73 | 5.41 | -- | -- | 1.64 | -- | -- | -0.0537 | -- | 91 | 5186 | -- | -- |
| 289.15 | 0.794 | 5.52 | -- | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.61 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 167.48 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 6 | 167.81 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 19 | 8 |
| 16 | 168.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 55 | 169.08 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 67 | 169.27 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 95 | 169.55 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 104 | 169.63 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 108 | 169.65 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 130 | 169.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 138 | 169.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 177 | 170.21 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 232 | 170.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 234 | 170.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 242 | 170.64 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 250 | 170.69 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 265 | 170.74 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 275 | 170.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 13 |
| 292 | 170.86 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 304 | 170.91 | radiation | 40.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 321 | 170.91 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 353 | 170.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 379 | 171.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 387 | 171.13 | radiation | 20.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 429 | 171.17 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 459 | 171.18 | humidity | 60.0 | 90 | > th | dose independent | rect. | 1 | 21 |
| 519 | 171.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 618 | 171.47 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 628 | 171.49 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 639 | 171.55 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 643 | 171.55 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 664 | 171.58 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 665 | 171.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 685 | 171.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 686 | 171.65 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 688 | 171.66 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 703 | 171.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 705 | 171.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 720 | 171.80 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 731 | 171.82 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 754 | 171.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 766 | 171.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 779 | 171.87 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 819 | 171.93 | humidity | 90.0 | 4320 | > th | dose dependent | no | NA | NA |
| 831 | 171.94 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 835 | 171.95 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 836 | 171.95 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 907 | 172.01 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 919 | 172.04 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 944 | 172.08 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 954 | 172.10 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 955 | 172.10 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 970 | 172.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 981 | 172.15 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 984 | 172.15 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 987 | 172.15 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 988 | 172.16 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 990 | 172.16 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 993 | 172.18 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |