Os06g0647100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L35, chloroplast precursor (CL35).
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Os06g0647100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L35, chloroplast precursor (CL35).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.77 | 0.293 | 13.6 | -0.685 | 0.861 | -0.485 | 0.292 | -0.633 | -0.636 | 21.9 | 71.87 | 1637 | -- | -- |
| 39.52 | 0.293 | 13.6 | -0.732 | 0.867 | -0.493 | 0.228 | -- | -0.643 | 21.8 | 72 | 1598 | -- | -- |
| 39.1 | 0.291 | 13.6 | -0.699 | 0.858 | -0.488 | -- | -0.599 | -0.638 | 21.9 | 71.65 | 1637 | -- | -- |
| 39.7 | 0.293 | 13.6 | -0.779 | 0.866 | -0.523 | -- | -- | -0.66 | 21.9 | 72 | 1628 | -- | -- |
| 54.87 | 0.345 | 13.6 | -0.689 | -- | -1.03 | -- | -0.421 | -0.629 | -- | 74.91 | 853 | -- | -- |
| 47.23 | 0.322 | 13.6 | -0.685 | 0.863 | -- | 0.277 | -- | -0.593 | 21.6 | -- | -- | -- | -- |
| 47.52 | 0.323 | 13.6 | -0.695 | 0.862 | -- | -- | -- | -0.593 | 21.6 | -- | -- | -- | -- |
| 55.32 | 0.346 | 13.6 | -0.798 | -- | -1.04 | -- | -- | -0.654 | -- | 74.75 | 842 | -- | -- |
| 46.31 | 0.317 | 13.6 | -- | 0.921 | -0.785 | -- | -- | -0.623 | 21.5 | 71 | 27490 | -- | -- |
| 91.4 | 0.447 | 13.6 | -0.689 | -- | -- | -- | -- | -0.595 | -- | -- | -- | -- | -- |
| 60.25 | 0.363 | 13.6 | -- | 0.861 | -- | -- | -- | -0.516 | 21.5 | -- | -- | -- | -- |
| 72.11 | 0.395 | 13.6 | -- | -- | -0.979 | -- | -- | -0.603 | -- | 74 | 833 | -- | -- |
| 103.92 | 0.476 | 13.5 | -- | -- | -- | -- | -- | -0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.81 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 37.82 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 29 | 38.06 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 31 | 38.07 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 39 | 38.09 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 74 | 38.16 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 76 | 38.16 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 79 | 38.17 | humidity | 80 | 14400 | > th | dose independent | sin | 19 | NA |
| 116 | 38.21 | humidity | 80 | 14400 | < th | dose independent | sin | 18 | NA |
| 142 | 38.23 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 173 | 38.26 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 198 | 38.28 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 202 | 38.28 | humidity | 80 | 14400 | > th | dose dependent | sin | 19 | NA |
| 205 | 38.28 | humidity | 80 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 247 | 38.30 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 276 | 38.32 | temperature | 10 | 14400 | > th | dose dependent | sin | 23 | NA |
| 427 | 38.40 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 15 |
| 442 | 38.41 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 515 | 38.44 | temperature | 10 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 516 | 38.44 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 538 | 38.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 539 | 38.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 20 |
| 542 | 38.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 545 | 38.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 772 | 38.51 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 818 | 38.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 819 | 38.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 1 | 20 |
| 833 | 38.52 | temperature | 30 | 14400 | < th | dose dependent | sin | 23 | NA |
| 907 | 38.54 | humidity | 80 | 14400 | > th | dose independent | no | NA | NA |
| 938 | 38.54 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 954 | 38.55 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 1 |