Os06g0646700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0646700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.75 | 0.296 | 12.3 | 0.00344 | 0.31 | 0.836 | -0.667 | -0.628 | -0.0271 | 7.44 | 3.215 | 143 | -- | -- |
| 40.54 | 0.297 | 12.3 | -0.0258 | 0.313 | 0.693 | -0.891 | -- | -0.0353 | 5.15 | 4.216 | 139 | -- | -- |
| 40.8 | 0.297 | 12.3 | -0.0162 | 0.309 | 0.831 | -- | -0.47 | -0.0306 | 7.41 | 3.845 | 141 | -- | -- |
| 42.05 | 0.302 | 12.3 | -0.0215 | 0.3 | 0.805 | -- | -- | -0.0302 | 7.1 | 3.816 | 141 | -- | -- |
| 43.66 | 0.308 | 12.3 | -0.00179 | -- | 0.821 | -- | -0.473 | -0.0122 | -- | 3.539 | 224 | -- | -- |
| 47.48 | 0.323 | 12.4 | -0.0726 | 0.984 | -- | -0.612 | -- | -0.0773 | 2.29 | -- | -- | -- | -- |
| 48.85 | 0.327 | 12.4 | -0.0554 | 0.982 | -- | -- | -- | -0.0735 | 2.24 | -- | -- | -- | -- |
| 45.06 | 0.313 | 12.3 | -0.00192 | -- | 0.826 | -- | -- | -0.0354 | -- | 3.321 | 227 | -- | -- |
| 42.07 | 0.302 | 12.3 | -- | 0.3 | 0.807 | -- | -- | -0.0277 | 7.12 | 3.803 | 141 | -- | -- |
| 106.23 | 0.482 | 12.3 | -0.0141 | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
| 48.93 | 0.327 | 12.3 | -- | 0.981 | -- | -- | -- | -0.0674 | 2.24 | -- | -- | -- | -- |
| 45.06 | 0.313 | 12.3 | -- | -- | 0.827 | -- | -- | -0.0345 | -- | 3.37 | 227 | -- | -- |
| 106.24 | 0.481 | 12.3 | -- | -- | -- | -- | -- | -0.0482 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 3 | 38.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 33 | 40.13 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 23 |
| 38 | 40.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 12 |
| 70 | 40.59 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 74 | 40.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 82 | 40.65 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 20 |
| 83 | 40.66 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 85 | 40.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 89 | 40.71 | radiation | 1 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 105 | 40.79 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 116 | 40.81 | radiation | 1 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 139 | 40.88 | radiation | 1 | 90 | < th | dose dependent | no | NA | NA |
| 149 | 40.92 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 17 |
| 151 | 40.93 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 23 |
| 154 | 40.94 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 9 |
| 161 | 40.97 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 20 |
| 181 | 41.02 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 11 |
| 186 | 41.03 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 12 |
| 205 | 41.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 217 | 41.11 | temperature | 20 | 90 | > th | dose dependent | sin | 16 | NA |
| 219 | 41.13 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 23 |
| 237 | 41.16 | radiation | 1 | 90 | < th | dose independent | rect. | 21 | 23 |
| 244 | 41.17 | temperature | 10 | 30 | > th | dose dependent | sin | 16 | NA |
| 258 | 41.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 260 | 41.19 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 262 | 41.20 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 23 |
| 267 | 41.21 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 268 | 41.21 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 270 | 41.21 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 14 |
| 402 | 41.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 407 | 41.32 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 11 |
| 440 | 41.36 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 478 | 41.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 485 | 41.42 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 3 |
| 506 | 41.47 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 539 | 41.53 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 23 |
| 633 | 41.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 636 | 41.69 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 23 |
| 653 | 41.71 | radiation | 30 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 659 | 41.73 | temperature | 25 | 90 | < th | dose independent | sin | 17 | NA |
| 691 | 41.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 692 | 41.78 | temperature | 25 | 90 | > th | dose independent | sin | 17 | NA |
| 822 | 41.88 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 937 | 42.04 | radiation | 1 | 90 | > th | dose independent | rect. | 13 | 23 |
| 965 | 42.08 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 17 |