Os06g0646400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os06g0646400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.49 | 0.232 | 10.8 | 0.457 | 0.345 | 0.584 | 0.376 | 0.712 | 0.141 | 21.9 | 20.2 | 1479 | -- | -- |
| 25.2 | 0.234 | 10.8 | 0.357 | 0.328 | 0.423 | 0.383 | -- | 0.0895 | 21.5 | 21.4 | 2635 | -- | -- |
| 24.98 | 0.233 | 10.8 | 0.44 | 0.344 | 0.587 | -- | 0.715 | 0.138 | 22.3 | 20.2 | 1550 | -- | -- |
| 25.79 | 0.237 | 10.8 | 0.319 | 0.317 | 0.421 | -- | -- | 0.0937 | 22.3 | 21.31 | 2191 | -- | -- |
| 30.98 | 0.259 | 10.7 | 0.414 | -- | 0.626 | -- | 0.734 | 0.116 | -- | 20.5 | 2251 | -- | -- |
| 30.03 | 0.257 | 10.7 | 0.534 | 0.351 | -- | 0.413 | -- | 0.219 | 22 | -- | -- | -- | -- |
| 30.63 | 0.259 | 10.7 | 0.517 | 0.348 | -- | -- | -- | 0.217 | 22.3 | -- | -- | -- | -- |
| 31.79 | 0.263 | 10.8 | 0.295 | -- | 0.476 | -- | -- | 0.0779 | -- | 21.38 | 2248 | -- | -- |
| 27.29 | 0.243 | 10.8 | -- | 0.345 | 0.568 | -- | -- | 0.0491 | 22.1 | 20.5 | 2723 | -- | -- |
| 38 | 0.288 | 10.7 | 0.522 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 37.67 | 0.287 | 10.8 | -- | 0.351 | -- | -- | -- | 0.159 | 22.4 | -- | -- | -- | -- |
| 33.36 | 0.269 | 10.8 | -- | -- | 0.646 | -- | -- | 0.0351 | -- | 20.5 | 2370 | -- | -- |
| 45.19 | 0.314 | 10.8 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 23.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 3 | 23.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 4 | 23.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 10 | 23.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 13 | 23.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 20 | 23.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 21 | 23.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 23 | 23.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 25 | 23.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 27 | 23.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 30 | 23.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 33 | 23.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 34 | 23.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 41 | 23.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 79 | 23.94 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 15 |
| 137 | 24.05 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 171 | 24.11 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 192 | 24.13 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 14 |
| 217 | 24.17 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 15 |
| 545 | 24.54 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 566 | 24.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 603 | 24.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 612 | 24.59 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 650 | 24.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 699 | 24.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 711 | 24.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 722 | 24.67 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 19 |
| 734 | 24.68 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 755 | 24.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 763 | 24.71 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 811 | 24.75 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 816 | 24.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 920 | 24.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 938 | 24.83 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 18 |
| 999 | 24.87 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 8 |