Os06g0646100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0646100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.68 | 0.64 | 12.4 | -0.543 | 2.88 | -1.37 | -0.113 | -0.155 | -0.561 | 20.9 | 59 | 1116 | -- | -- |
| 185.71 | 0.635 | 12.4 | -0.537 | 2.88 | -1.38 | -0.136 | -- | -0.562 | 20.9 | 59.43 | 1115 | -- | -- |
| 185.72 | 0.635 | 12.4 | -0.541 | 2.88 | -1.37 | -- | -0.185 | -0.56 | 20.9 | 59.11 | 1115 | -- | -- |
| 185.77 | 0.635 | 12.4 | -0.531 | 2.88 | -1.39 | -- | -- | -0.563 | 20.9 | 59.17 | 1115 | -- | -- |
| 632.1 | 1.17 | 12.3 | -0.458 | -- | -1.17 | -- | 0.507 | -0.545 | -- | 57 | 1414 | -- | -- |
| 243.43 | 0.731 | 12.3 | -0.807 | 2.75 | -- | -0.317 | -- | -0.286 | 20.6 | -- | -- | -- | -- |
| 243.76 | 0.731 | 12.3 | -0.796 | 2.75 | -- | -- | -- | -0.286 | 20.6 | -- | -- | -- | -- |
| 630.59 | 1.17 | 12.3 | -0.588 | -- | -1.07 | -- | -- | -0.553 | -- | 58.81 | 1414 | -- | -- |
| 193.05 | 0.647 | 12.4 | -- | 2.87 | -1.44 | -- | -- | -0.524 | 20.9 | 59 | 1115 | -- | -- |
| 669.53 | 1.21 | 12.2 | -0.805 | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
| 260.48 | 0.755 | 12.3 | -- | 2.75 | -- | -- | -- | -0.197 | 20.6 | -- | -- | -- | -- |
| 636.62 | 1.18 | 12.2 | -- | -- | -1.15 | -- | -- | -0.0948 | -- | 72.65 | 1434 | -- | -- |
| 686.62 | 1.22 | 12.2 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.42 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 7 | 192.22 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 12 | 192.67 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 14 | 193.29 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 9 |
| 25 | 194.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 34 | 195.20 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 48 | 195.70 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 54 | 196.23 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 55 | 196.29 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 60 | 196.42 | humidity | 70 | 1440 | < th | dose dependent | sin | 11 | NA |
| 61 | 196.43 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 101 | 197.44 | humidity | 60 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 124 | 197.71 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 126 | 197.72 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 128 | 197.74 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 130 | 197.77 | humidity | 60 | 1440 | < th | dose dependent | sin | 15 | NA |
| 138 | 197.98 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 139 | 198.00 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 141 | 198.03 | humidity | 60 | 1440 | < th | dose independent | sin | 15 | NA |
| 155 | 198.18 | humidity | 60 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 201 | 198.47 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 224 | 198.66 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 226 | 198.66 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 307 | 199.10 | humidity | 60 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 308 | 199.10 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 336 | 199.22 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 351 | 199.23 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 446 | 199.27 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 510 | 199.48 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 513 | 199.49 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 526 | 199.50 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 533 | 199.51 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 535 | 199.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 546 | 199.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 547 | 199.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 550 | 199.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 555 | 199.58 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 582 | 199.61 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 616 | 199.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 622 | 199.62 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 631 | 199.62 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 664 | 199.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 665 | 199.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 680 | 199.66 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 693 | 199.70 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 708 | 199.72 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 772 | 199.86 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |
| 911 | 199.91 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |