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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0645500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sterile alpha motif homology domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0481) R2 : 0.12
β1 : -1.37 (0.176) R2dD : 0.121 R2D : 0.099
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.296 (0.103) R2dN8 : 0.0215 R2N8 : -0.000433
σ : 0.903
deviance : 373.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.48 0.864 3.43 -1.69 0.265 1.34 -1.61 4.1 -0.271 6.96 23.64 332 -- --
353.87 0.876 3.36 -1.11 0.0983 0.929 -1.16 -- -0.132 7.13 30.44 331 -- --
344.27 0.864 3.42 -1.63 0.277 1.47 -- 3.98 -0.26 6.15 22.91 300 -- --
356 0.879 3.35 -1.16 0.206 0.85 -- -- -0.117 3.33 28.2 546 -- --
348.13 0.869 3.43 -1.58 -- 1.65 -- 4.24 -0.249 -- 22.55 300 -- --
365.33 0.896 3.39 -1.36 0.357 -- -0.869 -- -0.306 6.67 -- -- -- --
366.3 0.896 3.39 -1.38 0.379 -- -- -- -0.306 5.41 -- -- -- --
357.44 0.881 3.35 -1.14 -- 0.97 -- -- -0.106 -- 29.7 370 -- --
386.05 0.915 3.32 -- 0.27 1.37 -- -- 0.09 2.2 29.17 669 -- --
373.78 0.903 3.39 -1.37 -- -- -- -- -0.296 -- -- -- -- --
416.71 0.955 3.35 -- 0.356 -- -- -- -0.152 5.57 -- -- -- --
388.03 0.917 3.3 -- -- 1.36 -- -- 0.103 -- 28.4 457 -- --
423.3 0.96 3.36 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.42 temperature 20.0 270 > th dose independent rect. 23 18
2 329.45 humidity 80.0 30 > th dose dependent rect. 24 6
10 331.36 temperature 20.0 270 > th dose independent rect. 22 21
15 331.80 temperature 20.0 90 > th dose independent rect. 24 6
18 332.30 temperature 30.0 720 < th dose dependent rect. 16 12
26 332.79 humidity 80.0 10 > th dose independent rect. 24 6
32 333.09 temperature 30.0 720 < th dose dependent sin 14 NA
57 334.04 temperature 20.0 270 > th dose independent rect. 24 3
59 334.04 temperature 15.0 10 > th dose independent rect. 6 19
70 334.51 humidity 70.0 270 > th dose dependent rect. 22 6
84 334.92 temperature 15.0 10 > th dose dependent rect. 1 5
105 335.68 humidity 90.0 90 < th dose dependent rect. 3 2
111 335.81 humidity 70.0 270 > th dose dependent rect. 24 3
122 336.08 humidity 80.0 270 > th dose independent rect. 24 3
123 336.09 radiation 10.0 10 < th dose independent rect. 24 6
127 336.12 humidity 70.0 270 > th dose dependent rect. 1 1
136 336.23 temperature 20.0 270 > th dose independent rect. 23 10
145 336.39 humidity 80.0 270 > th dose independent rect. 1 1
155 336.52 wind 7.0 1440 > th dose dependent rect. 12 1
164 336.64 atmosphere 1015.0 10 < th dose dependent rect. 24 6
172 336.76 temperature 20.0 720 > th dose independent rect. 7 14
189 336.95 wind 9.0 1440 < th dose independent rect. 12 2
202 337.12 radiation 10.0 30 < th dose independent rect. 13 17
219 337.37 humidity 90.0 1440 < th dose dependent rect. 2 1
230 337.46 temperature 10.0 720 > th dose dependent rect. 18 8
233 337.48 temperature 20.0 10 < th dose dependent rect. 3 20
245 337.67 wind 7.0 1440 > th dose independent rect. 12 1
249 337.69 temperature 10.0 720 > th dose dependent rect. 17 18
253 337.74 temperature 20.0 270 < th dose independent rect. 23 22
281 338.04 wind 9.0 1440 < th dose independent rect. 1 6
287 338.12 temperature 20.0 90 < th dose dependent rect. 2 3
291 338.13 temperature 25.0 270 < th dose dependent rect. 17 17
309 338.39 humidity 80.0 1440 > th dose independent rect. 2 1
313 338.41 temperature 20.0 270 > th dose independent rect. 7 23
322 338.45 wind 9.0 10 < th dose dependent rect. 24 6
324 338.46 radiation 10.0 90 < th dose dependent rect. 24 6
336 338.52 temperature 10.0 720 > th dose dependent rect. 15 15
340 338.55 temperature 10.0 720 > th dose dependent sin 12 NA
345 338.57 temperature 20.0 30 > th dose independent rect. 10 20
355 338.65 humidity 80.0 720 < th dose independent rect. 2 2
387 338.83 wind 3.0 270 < th dose dependent rect. 1 1
389 338.84 wind 1.0 10 > th dose independent rect. 20 14
396 338.89 wind 9.0 1440 < th dose independent rect. 11 5
403 338.93 humidity 60.0 270 > th dose dependent rect. 17 5
435 339.18 temperature 15.0 270 > th dose dependent rect. 22 7
464 339.35 humidity 70.0 270 > th dose dependent rect. 20 1
490 339.44 temperature 15.0 270 > th dose dependent rect. 24 3
510 339.51 temperature 15.0 270 > th dose dependent rect. 1 1
525 339.56 wind 9.0 10 < th dose independent rect. 6 18
527 339.56 temperature 25.0 270 < th dose dependent rect. 5 23
541 339.67 temperature 15.0 270 > th dose independent rect. 3 21
566 339.75 temperature 20.0 270 < th dose independent rect. 6 22
573 339.79 atmosphere 1015.0 270 < th dose dependent rect. 1 1
613 339.94 temperature 20.0 270 < th dose independent rect. 23 14
626 339.98 temperature 20.0 270 < th dose independent rect. 23 10
629 339.98 wind 1.0 10 > th dose independent rect. 6 18
637 340.01 temperature 20.0 270 < th dose independent rect. 23 5
638 340.01 radiation 30.0 270 < th dose independent rect. 18 14
645 340.03 wind 7.0 10 < th dose independent rect. 24 6
647 340.03 temperature 10.0 10 > th dose independent rect. 24 6
648 340.03 temperature 30.0 10 < th dose independent rect. 24 6
649 340.03 humidity 50.0 10 > th dose independent rect. 24 6
652 340.03 atmosphere 995.0 10 > th dose independent rect. 24 6
659 340.03 wind 9.0 270 < th dose dependent rect. 22 6
677 340.12 atmosphere 1010.0 10 < th dose independent rect. 24 6
678 340.12 temperature 15.0 270 > th dose independent rect. 18 15
700 340.19 wind 3.0 270 < th dose dependent rect. 24 3
708 340.23 atmosphere 1015.0 270 < th dose dependent rect. 24 3
720 340.29 temperature 25.0 90 < th dose independent rect. 21 2
724 340.30 temperature 25.0 270 < th dose dependent rect. 23 23
749 340.35 humidity 70.0 270 > th dose independent rect. 18 14
755 340.37 atmosphere 995.0 10 > th dose independent rect. 6 18
772 340.46 temperature 30.0 270 < th dose independent rect. 18 14
775 340.47 wind 9.0 270 < th dose independent rect. 4 18
788 340.53 humidity 60.0 10 > th dose independent rect. 6 6
824 340.61 humidity 50.0 10 > th dose dependent rect. 6 19
829 340.63 radiation 40.0 270 < th dose dependent rect. 18 15
833 340.65 atmosphere 1010.0 270 < th dose independent rect. 22 7
854 340.71 precipitation 0.1 10 < th dose independent rect. 6 18
856 340.71 precipitation 0.1 10 < th dose dependent rect. 6 18
870 340.75 atmosphere 995.0 270 > th dose independent rect. 4 18
872 340.75 temperature 25.0 270 < th dose dependent no NA NA
875 340.77 temperature 25.0 270 < th dose dependent sin 10 NA
901 340.86 humidity 90.0 270 > th dose independent rect. 20 1
919 340.88 temperature 10.0 1440 > th dose independent rect. 1 6
922 340.88 temperature 30.0 1440 < th dose independent rect. 1 6
926 340.88 humidity 50.0 1440 > th dose independent rect. 1 6
931 340.88 atmosphere 995.0 1440 > th dose independent rect. 1 6
932 340.88 radiation 40.0 1440 < th dose independent rect. 1 6
936 340.88 temperature 10.0 1440 > th dose independent rect. 7 18
939 340.88 atmosphere 1015.0 10 < th dose independent rect. 6 18
946 340.90 wind 7.0 270 < th dose independent rect. 18 14
969 341.00 temperature 10.0 270 > th dose dependent rect. 8 21