Os06g0644400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0644400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 303.33 | 0.818 | 3.12 | 0.0762 | 0.131 | 19.3 | 0.341 | -68.3 | 0.0869 | 14.5 | 0.2048 | 100 | -- | -- |
| 318.57 | 0.838 | 3.01 | 0.45 | 0.145 | -0.303 | 0.389 | -- | 0.06 | 14.7 | 0.2048 | 100 | -- | -- |
| 303.53 | 0.811 | 3.12 | 0.0456 | 0.138 | 19.5 | -- | -69.2 | 0.101 | 14.2 | 0.2874 | 100 | -- | -- |
| 315.57 | 0.827 | 3.01 | 0.422 | 0.146 | 1.35 | -- | -- | 0.0782 | 13.4 | -0.7981 | 67 | -- | -- |
| 304.18 | 0.812 | 3.12 | 0.0705 | -- | 19.5 | -- | -69.3 | 0.0788 | -- | 0.3246 | 114 | -- | -- |
| 318.66 | 0.837 | 3.01 | 0.445 | 0.147 | -- | 0.403 | -- | 0.0606 | 14.7 | -- | -- | -- | -- |
| 319.19 | 0.837 | 3.01 | 0.455 | 0.148 | -- | -- | -- | 0.0627 | 14 | -- | -- | -- | -- |
| 316.87 | 0.829 | 3.01 | 0.41 | -- | 1.38 | -- | -- | 0.0674 | -- | -0.9845 | 64 | -- | -- |
| 319.95 | 0.833 | 3.02 | -- | 0.14 | 1.52 | -- | -- | 0.0258 | 13.3 | -0.9338 | 61 | -- | -- |
| 320.51 | 0.837 | 3.01 | 0.449 | -- | -- | -- | -- | 0.0592 | -- | -- | -- | -- | -- |
| 324.65 | 0.843 | 3.02 | -- | 0.14 | -- | -- | -- | 0.012 | 14 | -- | -- | -- | -- |
| 321.16 | 0.835 | 3.02 | -- | -- | 1.51 | -- | -- | 0.0235 | -- | -0.9158 | 61 | -- | -- |
| 325.82 | 0.843 | 3.02 | -- | -- | -- | -- | -- | 0.00942 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 296.32 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 5 | 296.32 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 9 | 296.33 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 10 | 296.41 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 12 | 296.51 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 13 | 296.58 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 14 | 296.60 | humidity | 50.0 | 10 | < th | dose independent | rect. | 13 | 3 |
| 15 | 296.61 | humidity | 60.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 334 | 298.89 | humidity | 50.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 395 | 300.15 | humidity | 50.0 | 10 | < th | dose dependent | sin | 13 | NA |
| 399 | 300.87 | humidity | 50.0 | 10 | < th | dose independent | sin | 13 | NA |
| 402 | 301.13 | radiation | 40.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 404 | 301.22 | humidity | 50.0 | 10 | > th | dose independent | sin | 13 | NA |
| 407 | 301.26 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 2 | 17 |
| 408 | 301.27 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 411 | 301.50 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 415 | 301.53 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 15 |
| 419 | 301.53 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 427 | 301.67 | wind | 9.0 | 10 | > th | dose independent | rect. | 19 | 16 |
| 428 | 301.82 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 8 |
| 434 | 301.83 | wind | 9.0 | 10 | > th | dose dependent | rect. | 19 | 16 |
| 435 | 301.86 | wind | 3.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 436 | 301.88 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 444 | 301.88 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 445 | 301.89 | wind | 9.0 | 10 | > th | dose independent | rect. | 21 | 14 |
| 449 | 301.89 | wind | 9.0 | 10 | > th | dose dependent | rect. | 21 | 14 |
| 453 | 301.93 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 457 | 301.93 | wind | 9.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 461 | 301.94 | humidity | 60.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 463 | 301.94 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 478 | 302.22 | wind | 7.0 | 30 | > th | dose dependent | rect. | 7 | 4 |
| 528 | 302.30 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 1 | NA |
| 544 | 302.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 563 | 302.69 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 8 |
| 600 | 303.53 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 22 |
| 610 | 303.65 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 614 | 303.75 | humidity | 50.0 | 90 | < th | dose independent | sin | 7 | NA |
| 618 | 303.83 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 17 |
| 619 | 303.83 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 18 |
| 641 | 303.88 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 15 |
| 665 | 303.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 667 | 303.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 709 | 304.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 710 | 304.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 719 | 304.15 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 19 |
| 720 | 304.18 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 2 | 1 |
| 721 | 304.18 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 722 | 304.19 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 725 | 304.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 17 |
| 731 | 304.29 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 736 | 304.34 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 742 | 304.36 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 749 | 304.40 | precipitation | 0.1 | 90 | > th | dose independent | sin | 0 | NA |
| 755 | 304.50 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 790 | 304.58 | wind | 7.0 | 10 | < th | dose independent | rect. | 4 | 22 |
| 794 | 304.60 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 804 | 304.63 | precipitation | 0.1 | 90 | < th | dose independent | sin | 0 | NA |
| 806 | 304.63 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 0 | NA |
| 811 | 304.64 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 813 | 304.66 | temperature | 30.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 857 | 304.82 | temperature | 15.0 | 720 | > th | dose independent | rect. | 4 | 11 |
| 858 | 304.82 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 874 | 304.91 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 12 |
| 888 | 304.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 933 | 305.28 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 963 | 305.38 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 964 | 305.38 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 972 | 305.42 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 22 |
| 974 | 305.44 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 12 |
| 982 | 305.47 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 8 |