Os06g0644300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os06g0644300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.7 | 0.351 | 7.81 | 1.22 | 0.345 | 0.688 | -1.17 | 0.209 | 0.513 | 5.14 | 68.71 | 834 | -- | -- |
| 55.7 | 0.348 | 7.8 | 1.22 | 0.375 | 0.711 | -1.11 | -- | 0.521 | 5.05 | 70.01 | 870 | -- | -- |
| 58.63 | 0.357 | 7.8 | 1.2 | 0.466 | 0.656 | -- | 0.101 | 0.533 | 5.87 | 73.99 | 973 | -- | -- |
| 58.63 | 0.357 | 7.8 | 1.21 | 0.501 | 0.654 | -- | -- | 0.527 | 5.94 | 73 | 1023 | -- | -- |
| 60.04 | 0.361 | 7.81 | 1.25 | -- | 0.793 | -- | -0.438 | 0.544 | -- | 72.14 | 547 | -- | -- |
| 63.46 | 0.373 | 7.81 | 1.25 | 0.583 | -- | -0.67 | -- | 0.459 | 6.94 | -- | -- | -- | -- |
| 64.45 | 0.376 | 7.81 | 1.24 | 0.581 | -- | -- | -- | 0.462 | 7.28 | -- | -- | -- | -- |
| 60.37 | 0.362 | 7.81 | 1.22 | -- | 0.797 | -- | -- | 0.535 | -- | 72.07 | 571 | -- | -- |
| 95.6 | 0.455 | 7.82 | -- | 0.615 | 0.761 | -- | -- | 0.42 | 7.01 | 82.79 | 1308 | -- | -- |
| 82.38 | 0.424 | 7.82 | 1.25 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 104.72 | 0.479 | 7.84 | -- | 0.594 | -- | -- | -- | 0.325 | 7.15 | -- | -- | -- | -- |
| 97.57 | 0.46 | 7.83 | -- | -- | 0.845 | -- | -- | 0.435 | -- | 80.2 | 478 | -- | -- |
| 123.33 | 0.518 | 7.85 | -- | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 2 | 54.35 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 21 |
| 7 | 54.63 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 10 | 54.71 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 21 |
| 13 | 54.74 | humidity | 80 | 720 | > th | dose dependent | rect. | 3 | 16 |
| 14 | 54.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 19 | 54.81 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 20 |
| 27 | 54.88 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 15 |
| 30 | 54.90 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 13 |
| 34 | 54.95 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 10 |
| 49 | 55.04 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 2 |
| 67 | 55.13 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 14 |
| 82 | 55.22 | humidity | 80 | 720 | > th | dose independent | sin | 2 | NA |
| 88 | 55.26 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 90 | 55.27 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 12 |
| 99 | 55.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 100 | 55.31 | humidity | 70 | 720 | > th | dose dependent | sin | 2 | NA |
| 154 | 55.48 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 166 | 55.52 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 20 |
| 174 | 55.54 | humidity | 80 | 720 | > th | dose independent | rect. | 22 | 21 |
| 193 | 55.58 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 252 | 55.72 | humidity | 70 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 256 | 55.74 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 258 | 55.74 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 10 |
| 287 | 55.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 297 | 55.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 316 | 55.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 341 | 55.88 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 21 |
| 344 | 55.89 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 365 | 55.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 368 | 55.94 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 384 | 55.97 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 411 | 56.01 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 439 | 56.03 | humidity | 50 | 270 | > th | dose dependent | sin | 9 | NA |
| 460 | 56.05 | radiation | 1 | 720 | > th | dose independent | sin | 0 | NA |
| 467 | 56.06 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 485 | 56.08 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 23 |
| 499 | 56.10 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 511 | 56.11 | humidity | 80 | 270 | > th | dose independent | sin | 8 | NA |
| 542 | 56.13 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 545 | 56.14 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 546 | 56.14 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 601 | 56.16 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 605 | 56.16 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 630 | 56.19 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 20 |
| 656 | 56.23 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 19 |
| 681 | 56.25 | humidity | 60 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 764 | 56.36 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 772 | 56.36 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 837 | 56.43 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 23 |
| 851 | 56.45 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 930 | 56.55 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 2 |
| 977 | 56.60 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 23 |
| 984 | 56.61 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 993 | 56.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |