Os06g0643300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Development protein-like protein.
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Os06g0643300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Development protein-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.34 | 0.165 | 12.9 | 0.398 | 0.38 | -0.334 | -0.0537 | 0.202 | 0.073 | 11.9 | 80 | 813 | -- | -- |
| 12.41 | 0.164 | 12.9 | 0.408 | 0.375 | -0.327 | 0.00248 | -- | 0.0733 | 12 | 80 | 821 | -- | -- |
| 12.35 | 0.164 | 12.9 | 0.398 | 0.38 | -0.334 | -- | 0.168 | 0.0727 | 12 | 80.08 | 821 | -- | -- |
| 12.41 | 0.164 | 12.9 | 0.411 | 0.378 | -0.331 | -- | -- | 0.0748 | 12 | 80 | 821 | -- | -- |
| 15.24 | 0.183 | 12.9 | 0.393 | -- | -0.193 | -- | 0.0612 | 0.0878 | -- | 77.98 | 3109 | -- | -- |
| 14.52 | 0.179 | 12.9 | 0.426 | 0.281 | -- | 0.00662 | -- | 0.09 | 13.6 | -- | -- | -- | -- |
| 14.52 | 0.178 | 12.9 | 0.426 | 0.281 | -- | -- | -- | 0.09 | 13.6 | -- | -- | -- | -- |
| 15.26 | 0.183 | 12.9 | 0.398 | -- | -0.192 | -- | -- | 0.0909 | -- | 79 | 3116 | -- | -- |
| 16.48 | 0.189 | 12.9 | -- | 0.393 | -0.391 | -- | -- | 0.0384 | 11.7 | 78.93 | 826 | -- | -- |
| 19.36 | 0.206 | 12.9 | 0.414 | -- | -- | -- | -- | 0.0838 | -- | -- | -- | -- | -- |
| 19.3 | 0.206 | 12.9 | -- | 0.274 | -- | -- | -- | 0.0426 | 13.6 | -- | -- | -- | -- |
| 19.41 | 0.206 | 12.9 | -- | -- | -0.201 | -- | -- | 0.0472 | -- | 78.93 | 826 | -- | -- |
| 23.89 | 0.228 | 12.9 | -- | -- | -- | -- | -- | 0.0378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.14 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 22 |
| 3 | 12.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 10 | 12.24 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 16 | 12.28 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 24 | 12.30 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 46 | 12.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 53 | 12.34 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 78 | 12.38 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 81 | 12.39 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 88 | 12.39 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 93 | 12.40 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 22 |
| 94 | 12.40 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 22 |
| 111 | 12.42 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 129 | 12.43 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 147 | 12.44 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 151 | 12.45 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 169 | 12.45 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 191 | 12.47 | humidity | 80.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 193 | 12.47 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 200 | 12.48 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 212 | 12.48 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 220 | 12.48 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 230 | 12.49 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 23 |
| 232 | 12.49 | humidity | 80.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 240 | 12.49 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 321 | 12.53 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 23 |
| 331 | 12.53 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 348 | 12.54 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 351 | 12.54 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 19 |
| 403 | 12.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 451 | 12.58 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 15 |
| 499 | 12.59 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 515 | 12.59 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 547 | 12.60 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 563 | 12.61 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 597 | 12.62 | humidity | 70.0 | 720 | > th | dose dependent | no | NA | NA |
| 598 | 12.62 | humidity | 80.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 612 | 12.62 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 653 | 12.63 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 679 | 12.64 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 698 | 12.65 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 728 | 12.65 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 746 | 12.65 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 766 | 12.66 | humidity | 70.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 787 | 12.66 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 790 | 12.66 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 803 | 12.67 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 804 | 12.67 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 819 | 12.67 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 849 | 12.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 875 | 12.68 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 898 | 12.68 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 918 | 12.69 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 919 | 12.69 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 975 | 12.70 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |