Os06g0642600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0642600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.88 | 0.592 | 4.5 | 4.13 | 1.1 | 0.237 | 1.95 | -1.7 | 0.441 | 21.5 | 24.1 | 302 | -- | -- |
| 167.89 | 0.608 | 4.55 | 3.52 | 1.03 | 0.201 | 2.08 | -- | 0.289 | 21.2 | 24.1 | 302 | -- | -- |
| 169.85 | 0.607 | 4.5 | 4.07 | 1.02 | 0.122 | -- | -1.9 | 0.404 | 21.7 | 24.1 | 702 | -- | -- |
| 182.23 | 0.633 | 4.55 | 3.47 | 1.01 | 0.219 | -- | -- | 0.285 | 21.4 | 24 | 176 | -- | -- |
| 233.72 | 0.712 | 4.42 | 4.2 | -- | -0.0408 | -- | -2.27 | 0.391 | -- | 23.07 | 900 | -- | -- |
| 170.65 | 0.612 | 4.58 | 3.45 | 1.06 | -- | 2.02 | -- | 0.186 | 21.5 | -- | -- | -- | -- |
| 185.69 | 0.638 | 4.58 | 3.38 | 1.05 | -- | -- | -- | 0.182 | 21.7 | -- | -- | -- | -- |
| 240.46 | 0.725 | 4.51 | 3.53 | -- | 0.361 | -- | -- | 0.341 | -- | 23.9 | 81 | -- | -- |
| 249.67 | 0.736 | 4.83 | -- | 1.02 | -2.29 | -- | -- | -0.942 | 21.5 | 21 | 47520 | -- | -- |
| 251 | 0.74 | 4.55 | 3.38 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 486.07 | 1.03 | 4.66 | -- | 1.06 | -- | -- | -- | -0.194 | 21.9 | -- | -- | -- | -- |
| 310.65 | 0.821 | 4.81 | -- | -- | -2.32 | -- | -- | -0.954 | -- | 21.07 | 47520 | -- | -- |
| 553.22 | 1.1 | 4.63 | -- | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.27 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 4 | 150.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 6 | 150.63 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 7 | 150.83 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 14 | 151.25 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 16 | 151.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 21 | 151.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 27 | 151.73 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 29 | 151.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 32 | 151.83 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 40 | 151.90 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 44 | 151.95 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 21 |
| 73 | 152.34 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 85 | 152.41 | wind | 3 | 43200 | < th | dose dependent | sin | 12 | NA |
| 96 | 152.52 | wind | 3 | 43200 | < th | dose dependent | no | NA | NA |
| 102 | 152.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 107 | 152.58 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 110 | 152.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 119 | 152.64 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 120 | 152.64 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 122 | 152.65 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 185 | 153.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 205 | 153.12 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 208 | 153.13 | wind | 3 | 43200 | < th | dose dependent | sin | 1 | NA |
| 234 | 153.23 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 266 | 153.33 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 279 | 153.41 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 340 | 153.65 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 378 | 153.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 2 | 11 |
| 393 | 153.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 412 | 153.98 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 424 | 154.01 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 425 | 154.01 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 526 | 154.36 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 566 | 154.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 569 | 154.52 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 578 | 154.55 | wind | 3 | 14400 | < th | dose independent | sin | 12 | NA |
| 596 | 154.63 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 617 | 154.69 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 653 | 154.80 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 658 | 154.81 | wind | 3 | 43200 | < th | dose independent | sin | 0 | NA |
| 662 | 154.82 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 668 | 154.84 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 713 | 154.97 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 765 | 155.07 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 19 |
| 824 | 155.15 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 837 | 155.18 | wind | 3 | 43200 | > th | dose independent | sin | 23 | NA |
| 870 | 155.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 891 | 155.27 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 901 | 155.28 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 921 | 155.32 | wind | 3 | 14400 | > th | dose independent | sin | 12 | NA |
| 943 | 155.36 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 955 | 155.38 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 993 | 155.44 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 994 | 155.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 5 |