Os06g0641500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os06g0641500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.4 | 0.736 | 7.74 | 1.05 | 1.19 | 1.03 | 0.256 | 0.531 | 0.205 | 8.19 | 69.37 | 1266 | -- | -- |
| 245.14 | 0.729 | 7.74 | 0.979 | 1.19 | 1.07 | 0.208 | -- | 0.261 | 8.22 | 68.77 | 1261 | -- | -- |
| 245.6 | 0.73 | 7.75 | 1.05 | 1.19 | 1.03 | -- | 0.501 | 0.203 | 8.22 | 69.31 | 1265 | -- | -- |
| 245.26 | 0.729 | 7.74 | 0.987 | 1.19 | 1.06 | -- | -- | 0.262 | 8.24 | 68.72 | 1261 | -- | -- |
| 317.78 | 0.83 | 7.77 | 1.11 | -- | 0.972 | -- | 0.648 | 0.229 | -- | 69.56 | 1397 | -- | -- |
| 287.1 | 0.794 | 7.74 | 1.2 | 1.16 | -- | 0.3 | -- | 0.268 | 7.48 | -- | -- | -- | -- |
| 287.34 | 0.794 | 7.74 | 1.21 | 1.16 | -- | -- | -- | 0.268 | 7.52 | -- | -- | -- | -- |
| 318 | 0.831 | 7.77 | 1.01 | -- | 1.01 | -- | -- | 0.287 | -- | 68.98 | 1398 | -- | -- |
| 270.18 | 0.766 | 7.76 | -- | 1.21 | 1.19 | -- | -- | 0.153 | 8.25 | 68.97 | 1261 | -- | -- |
| 359.3 | 0.886 | 7.77 | 1.23 | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
| 326.05 | 0.845 | 7.77 | -- | 1.17 | -- | -- | -- | 0.133 | 7.45 | -- | -- | -- | -- |
| 343.78 | 0.864 | 7.79 | -- | -- | 1.15 | -- | -- | 0.173 | -- | 68.47 | 1388 | -- | -- |
| 399.16 | 0.933 | 7.8 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 2 | 237.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 21 |
| 4 | 237.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 5 | 237.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 9 | 238.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 16 | 238.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 28 | 238.47 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 33 | 238.56 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 62 | 238.84 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 73 | 239.06 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 98 | 239.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 101 | 239.15 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 119 | 239.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 125 | 239.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 157 | 239.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 161 | 239.50 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 170 | 239.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 178 | 239.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 181 | 239.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 183 | 239.62 | humidity | 80 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 185 | 239.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 188 | 239.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 207 | 239.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 212 | 239.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 225 | 239.84 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 228 | 239.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 242 | 239.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 249 | 239.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 267 | 240.06 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 315 | 240.42 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 335 | 240.51 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 337 | 240.52 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 342 | 240.53 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 358 | 240.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 382 | 240.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 411 | 241.05 | humidity | 80 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 413 | 241.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 429 | 241.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 434 | 241.21 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 452 | 241.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 464 | 241.44 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 554 | 241.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 569 | 241.91 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 576 | 241.96 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 594 | 242.09 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 598 | 242.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 658 | 242.33 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 663 | 242.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 667 | 242.36 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 674 | 242.39 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 679 | 242.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 703 | 242.48 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 730 | 242.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 735 | 242.65 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 739 | 242.66 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 754 | 242.75 | wind | 3 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 757 | 242.76 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 797 | 242.90 | temperature | 30 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 798 | 242.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 801 | 242.92 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 874 | 243.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 883 | 243.32 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 888 | 243.34 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 890 | 243.35 | temperature | 25 | 14400 | < th | dose independent | sin | 4 | NA |
| 899 | 243.41 | temperature | 10 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 912 | 243.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 949 | 243.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 963 | 243.69 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 964 | 243.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 966 | 243.70 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 973 | 243.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 975 | 243.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 978 | 243.75 | humidity | 70 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 985 | 243.77 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 989 | 243.79 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 991 | 243.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 20 |