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Os06g0640500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.77 (0.306) R2 : 0.657
β1 : -9.33 (0.932) R2dD : 6.44 R2D : -23
β2 : 0.696 (0.0741) R2dC : 0.0684 R2C : -15.4
β3 : -134 (12.2) R2dE : 534 R2E : -526
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -401 (37.1) R2dD*E : 509 R2D*E : -517
γ1 : 1.07 (0.0605) R2dN8 : 0.32 R2N8 : -13.3
σ : 0.525
deviance : 127.06
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C
peak time of C : 6.36
E
wheather : radiation
threshold : 1.301
memory length : 1348
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 0.928

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.19 0.53 8.74 -9.43 0.696 -134 0.546 -401 1.07 6.27 1.237 1363 11 0.949
221.96 0.699 12 1.05 0.575 0.122 1.39 -- 1.2 6.04 1.237 1363 11 0.949
127.06 0.525 8.77 -9.33 0.696 -134 -- -401 1.07 6.36 1.301 1348 11 0.928
203.18 0.664 12 1.15 0.618 -0.689 -- -- 1.22 5.62 15.29 1278 11.7 1.32
152.2 0.575 8.79 -9.27 -- -134 -- -399 1.08 -- 1.281 1364 11 0.84
221.98 0.698 12 1.05 0.575 -- 1.39 -- 1.2 6.05 -- -- -- --
226.21 0.704 12 1.06 0.588 -- -- -- 1.19 6.62 -- -- -- --
193.66 0.648 12 1.09 -- -1.28 -- -- 1.14 -- 2.841 2337 11.9 1.65
194.74 0.65 12.1 -- 1.12 -1.54 -- -- 0.833 5.63 0.002326 1103 13.6 4.77
244.25 0.73 12 1.08 -- -- -- -- 1.21 -- -- -- -- --
255.98 0.748 12.1 -- 0.602 -- -- -- 1.08 6.52 -- -- -- --
191.51 0.645 12.1 -- -- -1.92 -- -- 1.17 -- 5.446e-07 2546 12.9 3.02
274.84 0.774 12.1 -- -- -- -- -- 1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.98 radiation 1.0 1440 < th dose independent rect. 11 1
2 133.98 radiation 1.0 1440 < th dose dependent rect. 11 1
3 149.07 radiation 1.0 1440 < th dose dependent rect. 8 8
8 150.40 radiation 1.0 1440 < th dose independent rect. 8 6
19 151.22 radiation 1.0 1440 > th dose independent rect. 9 5
20 151.23 radiation 1.0 1440 > th dose independent rect. 8 7
24 151.27 radiation 1.0 1440 < th dose independent rect. 13 1
25 151.27 radiation 1.0 1440 < th dose dependent rect. 13 1
46 152.59 radiation 1.0 1440 > th dose independent rect. 13 1
52 153.25 radiation 1.0 1440 > th dose independent rect. 12 3
73 155.03 radiation 1.0 1440 < th dose independent rect. 11 19
74 155.19 radiation 1.0 1440 > th dose independent rect. 11 19
103 158.49 radiation 1.0 1440 < th dose dependent rect. 5 12
115 158.75 radiation 1.0 1440 < th dose independent rect. 11 16
128 158.80 radiation 1.0 1440 < th dose independent rect. 11 14
136 159.41 radiation 1.0 1440 < th dose dependent rect. 11 19
152 159.45 radiation 1.0 1440 < th dose dependent rect. 24 17
156 159.47 radiation 1.0 1440 < th dose dependent rect. 2 15
166 159.55 radiation 1.0 1440 < th dose independent sin 23 NA
171 159.57 radiation 1.0 1440 > th dose independent sin 22 NA
206 159.97 radiation 1.0 1440 < th dose dependent sin 23 NA
211 160.16 radiation 1.0 1440 < th dose dependent rect. 11 16
217 160.22 radiation 1.0 1440 < th dose dependent rect. 11 14
359 162.51 wind 7.0 43200 > th dose dependent rect. 15 2
403 163.50 radiation 1.0 1440 > th dose independent rect. 18 23
404 163.50 radiation 1.0 1440 < th dose independent rect. 18 23
412 163.86 radiation 1.0 1440 < th dose independent rect. 5 12
413 163.87 radiation 1.0 1440 > th dose independent rect. 5 12
415 163.94 wind 7.0 43200 > th dose dependent rect. 13 5
418 164.07 radiation 1.0 1440 < th dose independent rect. 2 15
419 164.07 radiation 1.0 1440 < th dose independent rect. 24 17
461 164.75 radiation 1.0 1440 < th dose independent rect. 5 22
473 164.79 radiation 1.0 1440 < th dose independent rect. 5 20
513 164.91 radiation 1.0 1440 < th dose independent rect. 2 23
522 164.93 radiation 1.0 1440 < th dose independent no NA NA
552 165.06 radiation 1.0 1440 > th dose independent no NA NA
624 165.54 radiation 1.0 1440 < th dose dependent rect. 5 22
632 165.58 radiation 1.0 1440 < th dose dependent rect. 5 20
664 165.91 radiation 1.0 1440 > th dose independent rect. 9 1
677 166.01 precipitation 0.1 270 > th dose dependent rect. 2 2
678 166.05 precipitation 0.1 270 > th dose independent rect. 2 2
717 166.27 radiation 1.0 1440 < th dose dependent rect. 2 23
725 166.29 radiation 1.0 1440 < th dose dependent no NA NA
759 166.72 humidity 60.0 14400 > th dose independent rect. 7 1
802 167.22 humidity 80.0 14400 > th dose independent rect. 21 2
821 167.82 humidity 60.0 14400 < th dose independent rect. 6 1
823 167.82 humidity 60.0 14400 < th dose independent rect. 20 1
825 167.82 radiation 20.0 14400 > th dose independent rect. 17 1
876 167.82 humidity 60.0 14400 < th dose dependent rect. 6 1
878 167.82 humidity 60.0 14400 < th dose dependent rect. 20 1
880 167.82 radiation 20.0 14400 > th dose dependent rect. 17 1
942 168.32 wind 7.0 43200 > th dose independent rect. 13 1
950 168.48 wind 7.0 4320 < th dose independent rect. 17 1
956 168.73 wind 9.0 43200 > th dose independent rect. 14 5
981 169.00 wind 7.0 43200 < th dose independent rect. 13 1
984 169.06 wind 9.0 43200 > th dose independent rect. 12 8
987 169.18 wind 9.0 43200 < th dose independent rect. 12 7
989 169.19 wind 9.0 43200 < th dose independent rect. 14 4
992 169.26 wind 9.0 14400 > th dose independent rect. 16 1