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Os06g0639500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.18 (0.0178) R2 : 0.0033
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.046 (0.0374) R2dN8 : 0.00426 R2N8 : 0.0033
σ : 0.335
deviance : 51.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.63 0.276 9.15 0.555 0.285 0.603 -0.337 0.308 0.112 0.374 2.079 5743 -- --
34.72 0.274 9.15 0.605 0.257 0.589 -0.321 -- 0.122 0.431 2.467 5776 -- --
34.99 0.275 9.15 0.58 0.262 0.643 -- 0.347 0.121 0.361 2.35 8528 -- --
34.72 0.274 9.14 0.59 0.271 0.666 -- -- 0.156 0.654 2.766 8660 -- --
36.52 0.281 9.14 0.606 -- 0.745 -- -0.0624 0.108 -- 2.623 8995 -- --
40.63 0.299 9.17 0.448 0.262 -- -0.391 -- 0.000324 0.306 -- -- -- --
41.27 0.301 9.17 0.463 0.264 -- -- -- 0.00181 0.565 -- -- -- --
36.23 0.28 9.14 0.613 -- 0.854 -- -- 0.165 -- 2.737 8978 -- --
42.25 0.303 9.16 -- 0.196 0.505 -- -- 0.083 23.6 7.33 9058 -- --
45.63 0.316 9.17 0.472 -- -- -- -- 0.00632 -- -- -- -- --
46.91 0.32 9.18 -- 0.271 -- -- -- -0.0497 0.649 -- -- -- --
44.46 0.311 9.14 -- -- 0.615 -- -- 0.113 -- 6.478 8997 -- --
51.5 0.335 9.18 -- -- -- -- -- -0.046 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.32 radiation 1.0 14400 > th dose independent rect. 18 12
2 33.36 wind 3.0 43200 < th dose dependent rect. 3 9
3 33.37 radiation 1.0 14400 < th dose independent rect. 18 12
8 33.50 humidity 80.0 14400 > th dose independent rect. 18 1
10 33.55 humidity 80.0 14400 > th dose independent rect. 17 3
26 33.64 precipitation 0.1 14400 < th dose independent rect. 13 1
27 33.64 wind 5.0 43200 < th dose dependent sin 4 NA
28 33.64 wind 9.0 43200 < th dose dependent rect. 6 1
29 33.64 precipitation 0.1 14400 < th dose dependent rect. 13 1
50 33.68 wind 1.0 43200 > th dose dependent rect. 6 1
58 33.69 wind 3.0 43200 < th dose independent rect. 3 11
64 33.70 wind 1.0 43200 > th dose dependent sin 4 NA
82 33.72 humidity 80.0 14400 > th dose dependent rect. 18 5
85 33.72 wind 1.0 43200 > th dose dependent rect. 3 12
87 33.73 wind 3.0 43200 > th dose independent rect. 3 11
94 33.74 humidity 80.0 14400 < th dose independent rect. 18 1
100 33.75 humidity 80.0 14400 < th dose independent rect. 17 3
101 33.75 wind 3.0 43200 < th dose independent rect. 3 4
103 33.75 humidity 80.0 14400 > th dose dependent rect. 18 3
112 33.76 radiation 1.0 4320 > th dose independent rect. 18 15
118 33.77 radiation 1.0 14400 > th dose independent rect. 18 1
140 33.78 radiation 1.0 14400 < th dose independent rect. 18 2
147 33.78 wind 1.0 43200 > th dose dependent rect. 4 10
159 33.79 radiation 20.0 4320 < th dose dependent rect. 18 2
180 33.81 radiation 1.0 14400 > th dose independent rect. 5 1
181 33.81 radiation 1.0 14400 < th dose independent rect. 5 1
196 33.82 wind 3.0 43200 > th dose independent rect. 3 4
199 33.82 radiation 1.0 4320 < th dose independent rect. 18 15
203 33.82 wind 1.0 43200 > th dose dependent rect. 5 8
209 33.83 radiation 1.0 14400 < th dose independent rect. 3 3
233 33.84 radiation 10.0 4320 < th dose dependent rect. 18 11
322 33.90 wind 9.0 43200 < th dose dependent rect. 18 19
323 33.91 humidity 80.0 43200 > th dose independent rect. 23 1
373 33.94 wind 5.0 43200 < th dose dependent rect. 20 17
377 33.94 wind 1.0 43200 > th dose dependent rect. 18 19
379 33.94 wind 1.0 43200 > th dose dependent rect. 20 20
382 33.95 wind 3.0 43200 > th dose independent sin 4 NA
416 33.96 wind 3.0 43200 < th dose independent sin 4 NA
478 33.99 precipitation 0.1 14400 > th dose independent rect. 13 1
607 34.04 humidity 90.0 4320 > th dose dependent rect. 6 2
625 34.05 precipitation 0.1 43200 > th dose independent rect. 19 1
626 34.05 humidity 80.0 43200 < th dose independent rect. 22 2
632 34.05 precipitation 0.1 43200 > th dose dependent rect. 19 1
749 34.09 wind 9.0 43200 < th dose dependent rect. 19 14
789 34.11 radiation 10.0 14400 > th dose dependent rect. 17 13
812 34.12 wind 5.0 43200 < th dose dependent rect. 19 14
823 34.13 wind 3.0 43200 > th dose independent rect. 11 2
835 34.13 precipitation 0.1 14400 > th dose dependent rect. 13 1
845 34.13 wind 1.0 43200 > th dose dependent rect. 19 14
859 34.14 humidity 70.0 14400 > th dose independent rect. 15 1
860 34.14 precipitation 0.1 43200 < th dose independent rect. 19 1
865 34.14 humidity 90.0 14400 > th dose dependent sin 15 NA
867 34.14 radiation 10.0 14400 > th dose dependent rect. 17 1
868 34.14 precipitation 0.1 43200 < th dose dependent rect. 19 1
893 34.14 humidity 90.0 14400 > th dose dependent rect. 5 21
925 34.15 wind 9.0 43200 < th dose dependent rect. 1 21
960 34.17 humidity 80.0 43200 > th dose independent rect. 22 9