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Os06g0638700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Putative cyclase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0312) R2 : 0.749
β1 : -1.09 (0.114) R2dD : 0.0524 R2D : -0.0166
β2 : 2.65 (0.0776) R2dC : 0.647 R2C : 0.624
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.756 (0.0665) R2dN8 : 0.0954 R2N8 : 0.0497
σ : 0.586
deviance : 156.69
__
_____
C
peak time of C : 20.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.25 0.554 7.82 -0.98 2.07 0.831 -0.095 -0.677 -0.734 19.6 0.02346 34 -- --
141.29 0.554 7.81 -0.998 2.07 0.828 -0.634 -- -0.734 19.6 0.02996 33 -- --
139.27 0.55 7.82 -0.982 2.07 0.833 -- -0.708 -0.734 19.6 0.008598 33 -- --
142.41 0.556 7.82 -0.988 2.07 0.83 -- -- -0.74 19.6 0.005117 33 -- --
306.77 0.82 7.74 -0.981 -- 1.49 -- -0.946 -0.664 -- 0.008598 33 -- --
153.94 0.582 7.84 -1.12 2.65 -- -0.902 -- -0.756 20.9 -- -- -- --
156.69 0.586 7.84 -1.09 2.65 -- -- -- -0.756 20.9 -- -- -- --
312.6 0.827 7.75 -1.01 -- 1.49 -- -- -0.676 -- 0.03994 28 -- --
168.83 0.605 7.83 -- 2.07 0.857 -- -- -0.721 19.5 0.009957 33 -- --
557.21 1.1 7.77 -1.09 -- -- -- -- -0.775 -- -- -- -- --
188.12 0.642 7.82 -- 2.65 -- -- -- -0.634 20.8 -- -- -- --
339.71 0.861 7.72 -- -- 1.5 -- -- -0.563 -- 0.03994 28 -- --
588.7 1.13 7.74 -- -- -- -- -- -0.654 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.02 atmosphere 1000.0 10 > th dose independent rect. 5 18
3 126.38 wind 7.0 270 < th dose independent rect. 7 20
4 126.49 wind 7.0 270 < th dose independent rect. 6 22
7 126.92 wind 5.0 90 < th dose independent rect. 11 17
8 126.93 wind 5.0 90 < th dose independent rect. 9 19
9 126.93 wind 9.0 90 < th dose dependent rect. 9 19
11 127.29 wind 9.0 270 < th dose dependent rect. 7 20
12 127.35 temperature 20.0 90 > th dose independent rect. 4 4
18 127.65 temperature 25.0 270 < th dose independent rect. 4 2
19 127.69 wind 5.0 90 < th dose independent rect. 23 5
21 127.75 precipitation 0.1 270 < th dose independent rect. 6 22
22 127.75 precipitation 0.1 270 < th dose dependent rect. 6 22
30 128.20 radiation 10.0 270 < th dose independent rect. 4 2
33 128.31 temperature 10.0 270 > th dose dependent rect. 4 2
34 128.34 humidity 50.0 270 > th dose dependent rect. 4 2
36 128.45 temperature 25.0 270 < th dose independent rect. 3 4
38 128.54 wind 9.0 90 < th dose dependent rect. 11 17
39 128.55 radiation 20.0 270 < th dose dependent rect. 4 2
46 128.67 wind 9.0 270 < th dose independent rect. 4 2
47 128.67 temperature 10.0 270 > th dose independent rect. 4 2
50 128.67 humidity 50.0 270 > th dose independent rect. 4 2
53 128.67 atmosphere 995.0 270 > th dose independent rect. 4 2
54 128.67 atmosphere 1015.0 270 < th dose independent rect. 4 2
59 128.67 temperature 10.0 270 > th dose independent rect. 6 22
61 128.75 precipitation 0.1 270 < th dose independent rect. 7 20
62 128.75 precipitation 0.1 270 < th dose dependent rect. 7 20
63 128.84 wind 5.0 90 < th dose independent rect. 13 15
64 128.85 precipitation 0.1 270 < th dose independent rect. 4 2
65 128.85 precipitation 0.1 270 < th dose dependent rect. 4 2
66 128.88 humidity 90.0 270 > th dose independent rect. 3 3
68 128.92 humidity 50.0 270 > th dose dependent rect. 3 4
77 129.12 temperature 15.0 90 > th dose independent rect. 4 19
85 129.32 wind 9.0 90 < th dose dependent rect. 22 6
90 129.42 wind 9.0 270 < th dose independent rect. 3 4
91 129.42 temperature 10.0 270 > th dose independent rect. 3 4
94 129.42 humidity 50.0 270 > th dose independent rect. 3 4
96 129.42 atmosphere 995.0 270 > th dose independent rect. 3 4
97 129.42 atmosphere 1015.0 270 < th dose independent rect. 3 4
98 129.42 radiation 30.0 270 < th dose independent rect. 3 4
100 129.42 temperature 10.0 270 > th dose independent rect. 7 20
110 129.48 temperature 10.0 90 > th dose independent rect. 9 19
115 129.52 radiation 40.0 270 < th dose dependent rect. 3 4
122 129.61 atmosphere 1010.0 270 < th dose independent rect. 13 9
126 129.63 precipitation 0.1 90 < th dose independent rect. 4 5
128 129.63 precipitation 0.1 90 < th dose dependent rect. 4 5
144 129.88 atmosphere 1015.0 90 < th dose independent rect. 4 19
148 130.00 wind 5.0 270 < th dose independent rect. 23 2
150 130.03 radiation 1.0 30 < th dose dependent sin 10 NA
152 130.05 precipitation 0.1 90 < th dose independent rect. 23 5
153 130.05 temperature 10.0 90 > th dose dependent rect. 4 4
154 130.05 precipitation 0.1 90 < th dose dependent rect. 23 5
160 130.16 wind 9.0 90 < th dose dependent rect. 17 11
165 130.19 wind 5.0 90 < th dose independent rect. 18 10
167 130.23 radiation 40.0 90 < th dose independent rect. 4 7
172 130.27 temperature 10.0 90 > th dose independent rect. 23 5
173 130.27 temperature 30.0 90 < th dose independent rect. 23 5
174 130.27 humidity 50.0 90 > th dose independent rect. 23 5
177 130.27 atmosphere 995.0 90 > th dose independent rect. 23 5
178 130.27 radiation 1.0 90 < th dose independent rect. 23 5
184 130.27 precipitation 0.1 90 < th dose independent rect. 9 19
185 130.27 radiation 1.0 90 < th dose dependent rect. 23 5
190 130.27 precipitation 0.1 90 < th dose dependent rect. 9 19
216 130.58 precipitation 0.1 90 < th dose independent rect. 4 19
219 130.58 precipitation 0.1 90 < th dose dependent rect. 4 19
224 130.63 wind 9.0 10 < th dose dependent rect. 23 6
229 130.69 precipitation 0.1 10 < th dose independent rect. 23 6
231 130.69 radiation 1.0 10 < th dose dependent rect. 23 6
232 130.69 precipitation 0.1 10 < th dose dependent rect. 23 6
235 130.72 radiation 40.0 90 < th dose independent rect. 4 19
239 130.74 wind 9.0 270 < th dose dependent rect. 4 2
240 130.74 atmosphere 995.0 90 > th dose dependent rect. 23 5
259 130.78 temperature 15.0 270 > th dose independent rect. 13 9
264 130.80 temperature 10.0 10 > th dose independent rect. 23 6
265 130.80 temperature 30.0 10 < th dose independent rect. 23 6
266 130.80 humidity 50.0 10 > th dose independent rect. 23 6
269 130.80 atmosphere 995.0 10 > th dose independent rect. 23 6
270 130.80 radiation 1.0 10 < th dose independent rect. 23 6
275 130.80 temperature 10.0 10 > th dose independent rect. 5 18
277 130.80 atmosphere 1015.0 10 < th dose independent rect. 5 18
281 130.81 wind 7.0 270 < th dose independent rect. 22 15
302 130.86 wind 9.0 90 < th dose dependent rect. 4 5
317 130.95 wind 9.0 270 < th dose dependent rect. 20 7
342 131.02 temperature 10.0 10 > th dose dependent rect. 5 3
347 131.05 radiation 40.0 10 < th dose dependent rect. 5 18
367 131.20 radiation 30.0 10 < th dose independent rect. 5 18
376 131.27 precipitation 0.1 270 < th dose independent rect. 22 15
377 131.27 precipitation 0.1 270 < th dose dependent rect. 22 15
420 131.42 precipitation 0.1 10 < th dose independent rect. 8 21
421 131.42 precipitation 0.1 10 < th dose dependent rect. 8 21
427 131.44 wind 9.0 90 < th dose independent rect. 4 19
477 131.67 temperature 10.0 270 > th dose independent rect. 22 15
478 131.67 atmosphere 995.0 270 > th dose independent rect. 22 15
482 131.70 wind 7.0 10 < th dose independent rect. 5 3
484 131.70 temperature 10.0 10 > th dose independent rect. 5 3
486 131.70 temperature 30.0 10 < th dose independent rect. 5 3
487 131.70 humidity 50.0 10 > th dose independent rect. 5 3
489 131.70 atmosphere 995.0 10 > th dose independent rect. 5 3
490 131.70 atmosphere 1015.0 10 < th dose independent rect. 5 3
491 131.70 temperature 10.0 10 > th dose independent rect. 8 21
507 131.75 wind 9.0 10 < th dose dependent rect. 9 20
513 131.79 temperature 20.0 90 > th dose independent rect. 15 17
556 131.97 wind 9.0 10 < th dose dependent rect. 5 4
561 131.99 atmosphere 995.0 90 > th dose independent rect. 9 19
576 132.06 atmosphere 995.0 270 > th dose independent rect. 13 9
601 132.18 wind 5.0 90 < th dose independent rect. 15 13
606 132.19 temperature 15.0 270 > th dose independent rect. 2 20
668 132.31 wind 9.0 270 < th dose dependent rect. 23 2
675 132.37 wind 1.0 90 > th dose independent rect. 23 5
678 132.38 humidity 50.0 90 > th dose dependent rect. 23 5
680 132.39 atmosphere 1005.0 270 > th dose independent rect. 23 2
716 132.43 atmosphere 995.0 10 > th dose dependent rect. 23 6
718 132.44 temperature 10.0 270 > th dose independent rect. 23 2
719 132.44 temperature 30.0 270 < th dose independent rect. 23 2
720 132.44 humidity 50.0 270 > th dose independent rect. 23 2
723 132.44 atmosphere 995.0 270 > th dose independent rect. 23 2
724 132.44 radiation 1.0 270 < th dose independent rect. 23 2
730 132.44 temperature 10.0 270 > th dose independent rect. 1 22
731 132.44 radiation 1.0 270 < th dose dependent rect. 23 2
757 132.48 precipitation 0.1 270 < th dose independent rect. 23 2
760 132.48 precipitation 0.1 270 < th dose dependent rect. 23 2
808 132.66 atmosphere 995.0 270 > th dose dependent rect. 4 2
811 132.67 wind 1.0 270 > th dose independent rect. 13 9
821 132.71 radiation 1.0 30 < th dose independent sin 10 NA
832 132.75 humidity 50.0 10 > th dose dependent rect. 23 6
921 133.02 atmosphere 995.0 270 > th dose dependent rect. 23 2
932 133.05 radiation 40.0 10 < th dose dependent rect. 5 4
944 133.08 wind 1.0 270 > th dose independent rect. 23 2
946 133.08 humidity 50.0 270 > th dose independent rect. 22 14
984 133.17 atmosphere 1015.0 90 < th dose independent rect. 23 5