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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0638400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0256) R2 : 0.302
β1 : -0.56 (0.1) R2dD : 0.0583 R2D : -0.0219
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.547 (0.261) R2dE : 0.016 R2E : -0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -25.3 (2.42) R2dD*E : 0.41 R2D*E : 0.224
γ1 : 0.0814 (0.0555) R2dN8 : 0.00468 R2N8 : 0.0111
σ : 0.474
deviance : 102.64
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 33
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.02
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.72 0.474 2.91 -0.558 0.127 -0.577 -0.196 -25.2 0.0812 6.94 1004 33 2.02 0.986
126.01 0.527 2.94 -0.158 0.123 1.42 -0.369 -- 0.0772 6.17 1004 33 2.02 0.986
101.8 0.474 2.9 -0.562 0.126 -0.57 -- -25.3 0.0811 7.38 1005 33 2.02 1
126.25 0.527 2.94 -0.16 0.126 1.44 -- -- 0.077 7.36 929.9 55 2.08 0.917
102.64 0.474 2.91 -0.56 -- -0.547 -- -25.3 0.0814 -- 1005 33 2.02 1
140.31 0.555 2.92 -0.163 0.192 -- -0.577 -- 0.183 5.1 -- -- -- --
141.13 0.556 2.92 -0.162 0.19 -- -- -- 0.186 5.55 -- -- -- --
127.09 0.527 2.94 -0.158 -- 1.47 -- -- 0.0773 -- 929.9 55 2.08 0.917
126.93 0.528 2.94 -- 0.125 1.45 -- -- 0.0949 7.45 929.9 55 2.08 0.917
143.01 0.559 2.92 -0.156 -- -- -- -- 0.191 -- -- -- -- --
141.82 0.557 2.91 -- 0.188 -- -- -- 0.204 5.59 -- -- -- --
127.75 0.528 2.94 -- -- 1.47 -- -- 0.095 -- 929.9 55 2.08 0.917
143.65 0.559 2.91 -- -- -- -- -- 0.208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.87 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 101.97 atmosphere 1005.0 30 > th dose independent rect. 2 1
3 102.01 temperature 20.0 30 > th dose dependent rect. 2 1
6 102.16 wind 3.0 30 < th dose independent rect. 2 1
9 102.25 wind 5.0 30 < th dose dependent rect. 2 1
13 102.38 temperature 20.0 30 > th dose independent rect. 2 1
18 102.50 temperature 10.0 30 > th dose independent rect. 2 1
20 102.50 temperature 30.0 30 < th dose independent rect. 2 1
21 102.50 humidity 50.0 30 > th dose independent rect. 2 1
25 102.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 102.50 radiation 1.0 30 < th dose independent rect. 2 1
32 102.50 precipitation 0.1 30 < th dose independent rect. 2 1
33 102.50 temperature 10.0 30 > th dose independent rect. 3 23
34 102.50 radiation 1.0 30 < th dose dependent rect. 2 1
39 102.50 precipitation 0.1 30 < th dose dependent rect. 2 1
40 102.62 humidity 50.0 30 > th dose dependent rect. 2 1
48 103.59 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 104.12 temperature 30.0 30 < th dose dependent rect. 2 1
54 105.20 wind 1.0 30 > th dose independent rect. 2 1
100 109.81 wind 9.0 1440 < th dose independent rect. 3 1
101 109.81 temperature 10.0 1440 > th dose independent rect. 3 1
104 109.81 temperature 30.0 1440 < th dose independent rect. 3 1
108 109.81 humidity 50.0 1440 > th dose independent rect. 3 1
117 109.81 atmosphere 995.0 1440 > th dose independent rect. 3 1
118 109.81 radiation 1.0 1440 < th dose independent rect. 3 1
138 109.81 temperature 10.0 1440 > th dose independent rect. 4 23
141 109.81 radiation 1.0 1440 < th dose dependent rect. 3 1
150 109.81 radiation 40.0 43200 < th dose dependent rect. 3 1
162 112.21 wind 9.0 30 < th dose independent rect. 3 23
163 112.49 atmosphere 995.0 30 > th dose independent rect. 3 23
171 115.46 precipitation 0.1 30 < th dose independent rect. 3 23
172 115.46 precipitation 0.1 30 < th dose dependent rect. 3 23
193 123.04 humidity 50.0 30 > th dose independent rect. 3 23
198 124.53 temperature 30.0 30 < th dose independent rect. 3 23
215 127.12 temperature 25.0 270 > th dose independent rect. 23 4
257 128.52 wind 1.0 10 < th dose independent rect. 6 21
267 128.92 wind 1.0 10 < th dose independent rect. 2 8
273 129.05 wind 1.0 30 > th dose independent rect. 3 23
281 129.47 wind 1.0 10 > th dose independent sin 5 NA
282 129.50 temperature 25.0 270 > th dose dependent rect. 23 4
285 129.64 atmosphere 1015.0 30 < th dose independent rect. 3 23
298 129.80 wind 1.0 10 < th dose independent rect. 9 18
309 130.08 wind 3.0 30 < th dose dependent rect. 2 5
311 130.17 wind 1.0 10 < th dose independent rect. 2 5
332 130.57 wind 1.0 10 > th dose independent rect. 7 23
333 130.59 wind 3.0 30 < th dose dependent rect. 2 8
338 130.69 wind 1.0 10 > th dose independent no NA NA
360 131.04 wind 1.0 10 < th dose independent rect. 12 15
377 131.30 humidity 90.0 90 < th dose independent rect. 2 1
433 132.27 atmosphere 1000.0 10 < th dose independent rect. 7 1
443 132.27 atmosphere 1000.0 10 < th dose dependent rect. 7 1
454 132.28 wind 1.0 10 > th dose independent rect. 21 23
572 132.99 radiation 10.0 30 < th dose dependent rect. 3 23
597 133.28 atmosphere 1005.0 90 > th dose dependent rect. 1 6
605 133.36 wind 1.0 10 < th dose independent sin 5 NA
614 133.43 wind 1.0 10 > th dose independent rect. 15 23
625 133.49 atmosphere 1005.0 10 > th dose dependent rect. 2 5
640 133.61 temperature 10.0 720 > th dose independent rect. 7 8
641 133.61 atmosphere 1015.0 720 < th dose independent rect. 7 8
642 133.61 temperature 10.0 720 > th dose independent rect. 15 16
643 133.61 radiation 1.0 30 < th dose independent rect. 3 23
647 133.64 temperature 20.0 10 > th dose independent rect. 2 5
681 133.75 atmosphere 995.0 720 > th dose independent rect. 7 8
685 133.76 atmosphere 995.0 720 > th dose independent rect. 15 16
697 133.85 wind 9.0 720 < th dose independent rect. 19 8
708 133.92 wind 1.0 10 > th dose independent rect. 17 23
737 134.02 temperature 10.0 720 > th dose independent rect. 19 8
738 134.02 temperature 30.0 720 < th dose independent rect. 19 8
739 134.02 humidity 50.0 720 > th dose independent rect. 19 8
740 134.02 atmosphere 995.0 720 > th dose independent rect. 19 8
741 134.02 radiation 1.0 720 < th dose independent rect. 19 8
746 134.02 precipitation 0.1 720 < th dose independent rect. 7 8
748 134.02 temperature 10.0 720 > th dose independent rect. 3 16
751 134.02 radiation 1.0 720 < th dose dependent rect. 19 8
756 134.02 precipitation 0.1 720 < th dose dependent rect. 7 8
773 134.05 wind 1.0 10 > th dose independent rect. 21 9
805 134.07 wind 1.0 10 < th dose independent rect. 9 22
820 134.08 wind 1.0 10 < th dose independent rect. 12 22
832 134.09 wind 1.0 10 < th dose independent no NA NA
859 134.19 atmosphere 995.0 720 > th dose independent rect. 3 16
877 134.29 wind 1.0 10 > th dose independent rect. 19 23
882 134.31 atmosphere 995.0 30 > th dose dependent rect. 3 23
883 134.32 humidity 90.0 10 > th dose independent rect. 24 3
887 134.33 wind 1.0 10 > th dose independent rect. 13 23
912 134.45 wind 1.0 30 < th dose dependent rect. 9 18
922 134.51 wind 1.0 10 > th dose independent rect. 11 23
926 134.53 wind 1.0 10 > th dose independent rect. 21 15
957 134.67 wind 1.0 10 > th dose independent rect. 23 23
969 134.72 precipitation 0.1 720 < th dose independent rect. 15 16
971 134.72 precipitation 0.1 720 < th dose dependent rect. 15 16
973 134.73 precipitation 0.1 720 < th dose independent rect. 19 8
975 134.73 precipitation 0.1 720 < th dose dependent rect. 19 8
978 134.76 wind 9.0 30 < th dose dependent rect. 3 23
981 134.77 humidity 50.0 30 > th dose dependent rect. 3 23
992 134.84 wind 1.0 10 > th dose independent rect. 21 12