Os06g0638200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0047 family protein.
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Os06g0638200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0047 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.41 | 0.35 | 13.4 | -0.671 | 1.72 | -0.876 | 1.79 | 5.22 | -0.305 | 9.35 | 25.85 | 659 | -- | -- |
| 60.06 | 0.361 | 13.4 | -1.37 | 1.8 | -0.453 | 1.36 | -- | -0.455 | 9.4 | 25.2 | 459 | -- | -- |
| 65.09 | 0.376 | 13.4 | -0.758 | 1.73 | -1.06 | -- | 5.54 | -0.392 | 9.45 | 27.44 | 579 | -- | -- |
| 66.57 | 0.38 | 13.5 | -1.33 | 1.76 | -0.514 | -- | -- | -0.461 | 9.44 | 25.59 | 493 | -- | -- |
| 193.46 | 0.648 | 13.4 | -0.169 | -- | -2.15 | -- | 5.65 | -0.0956 | -- | 24.77 | 678 | -- | -- |
| 63.75 | 0.374 | 13.5 | -1.47 | 1.92 | -- | 1.49 | -- | -0.489 | 9.12 | -- | -- | -- | -- |
| 71.52 | 0.396 | 13.5 | -1.42 | 1.91 | -- | -- | -- | -0.488 | 9.1 | -- | -- | -- | -- |
| 202.82 | 0.663 | 13.5 | -1.03 | -- | -1.63 | -- | -- | -0.347 | -- | 24.5 | 673 | -- | -- |
| 110.47 | 0.49 | 13.4 | -- | 1.64 | -0.835 | -- | -- | -0.267 | 9.67 | 24.87 | 552 | -- | -- |
| 282.61 | 0.786 | 13.5 | -1.42 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 124.33 | 0.522 | 13.4 | -- | 1.91 | -- | -- | -- | -0.331 | 9.15 | -- | -- | -- | -- |
| 231.64 | 0.709 | 13.4 | -- | -- | -1.88 | -- | -- | -0.184 | -- | 24.4 | 683 | -- | -- |
| 335.8 | 0.855 | 13.5 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.26 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 7 |
| 3 | 50.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 17 | 51.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 41 | 51.96 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 9 |
| 49 | 52.30 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 7 |
| 56 | 52.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 74 | 53.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 75 | 53.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 79 | 53.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 115 | 53.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 121 | 53.68 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 8 |
| 140 | 53.77 | temperature | 25 | 270 | > th | dose dependent | sin | 14 | NA |
| 152 | 53.84 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 5 |
| 185 | 53.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 198 | 54.05 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 11 |
| 203 | 54.09 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 262 | 54.38 | temperature | 30 | 90 | < th | dose dependent | sin | 16 | NA |
| 274 | 54.46 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 10 |
| 286 | 54.50 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 1 |
| 287 | 54.50 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 1 |
| 302 | 54.51 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 8 |
| 309 | 54.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 318 | 54.59 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 10 |
| 319 | 54.59 | temperature | 25 | 10 | < th | dose independent | rect. | 14 | 10 |
| 323 | 54.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 10 |
| 336 | 54.65 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 352 | 54.70 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 12 |
| 402 | 54.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 554 | 55.19 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 1 |
| 574 | 55.25 | temperature | 25 | 90 | < th | dose independent | sin | 16 | NA |
| 608 | 55.30 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 617 | 55.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 632 | 55.36 | temperature | 25 | 720 | > th | dose dependent | sin | 0 | NA |
| 650 | 55.39 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 18 |
| 662 | 55.41 | temperature | 25 | 90 | > th | dose independent | sin | 16 | NA |
| 663 | 55.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 666 | 55.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 685 | 55.45 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 14 |
| 724 | 55.54 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 1 |
| 749 | 55.59 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 1 |
| 765 | 55.61 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 16 |
| 782 | 55.63 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 21 |
| 819 | 55.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 821 | 55.72 | temperature | 25 | 10 | > th | dose independent | sin | 16 | NA |
| 855 | 55.77 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 862 | 55.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 3 |