Os06g0637500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYB transcription factor R2R3 type.
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Os06g0637500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MYB transcription factor R2R3 type.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 288.19 | 0.798 | 9.17 | -1.21 | 0.283 | -0.786 | 0.885 | -1.29 | -0.141 | 13.2 | 25.3 | 158 | -- | -- |
| 292.83 | 0.797 | 9.14 | -0.844 | 0.273 | -0.813 | 0.488 | -- | -0.0337 | 12.5 | 25.29 | 155 | -- | -- |
| 290.87 | 0.794 | 9.16 | -1.11 | 0.256 | -0.752 | -- | -0.985 | -0.125 | 12.3 | 25.26 | 158 | -- | -- |
| 293.84 | 0.798 | 9.14 | -0.827 | 0.267 | -0.805 | -- | -- | -0.0329 | 12.5 | 25.29 | 156 | -- | -- |
| 294.75 | 0.8 | 9.18 | -1.12 | -- | -0.687 | -- | -0.965 | -0.166 | -- | 25.29 | 167 | -- | -- |
| 328.08 | 0.849 | 9.21 | -1.06 | 0.509 | -- | 0.197 | -- | -0.39 | 6.04 | -- | -- | -- | -- |
| 328.17 | 0.848 | 9.21 | -1.06 | 0.511 | -- | -- | -- | -0.391 | 5.98 | -- | -- | -- | -- |
| 297.66 | 0.804 | 9.15 | -0.852 | -- | -0.739 | -- | -- | -0.072 | -- | 25.24 | 206 | -- | -- |
| 311.43 | 0.822 | 9.12 | -- | 0.318 | -0.857 | -- | -- | 0.0844 | 13.2 | 25.3 | 157 | -- | -- |
| 341.68 | 0.864 | 9.22 | -1.05 | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
| 357.8 | 0.885 | 9.18 | -- | 0.495 | -- | -- | -- | -0.273 | 6.09 | -- | -- | -- | -- |
| 316.58 | 0.829 | 9.12 | -- | -- | -0.797 | -- | -- | 0.0494 | -- | 25.25 | 169 | -- | -- |
| 370.5 | 0.898 | 9.19 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.70 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 14 | 260.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 20 | 261.43 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 21 | 261.65 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 22 | 261.80 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 28 | 262.26 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 34 | 262.59 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 45 | 262.90 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 51 | 263.04 | humidity | 50 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 57 | 263.17 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 65 | 263.37 | humidity | 60 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 67 | 263.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 94 | 263.99 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 104 | 264.19 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 109 | 264.25 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 119 | 264.36 | humidity | 50 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 165 | 264.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 181 | 264.92 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 228 | 265.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 273 | 265.46 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 20 | NA |
| 289 | 265.52 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 20 | NA |
| 324 | 265.66 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 345 | 265.78 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 349 | 265.79 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 359 | 265.84 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 365 | 265.85 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 400 | 265.96 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 408 | 265.98 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 454 | 266.10 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 457 | 266.11 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 506 | 266.23 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 518 | 266.25 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 545 | 266.29 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 2 | 11 |
| 572 | 266.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 591 | 266.37 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 8 | NA |
| 603 | 266.39 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 755 | 266.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 932 | 266.87 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 936 | 266.88 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 976 | 266.95 | atmosphere | 1010 | 14400 | > th | dose independent | no | NA | NA |
| 987 | 266.96 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 15 |